Stem-loop sequence gga-mir-103-2

Accession

MI0001213 (change log)

Description

Gallus gallus miR-103-2 stem-loop

Gene family

MIPF0000024; mir-103

Literature search

8 open access papers mention gga-mir-103-2
(86 sentences)

Stem-loop

   u      g      --   u  u           c   uu   u 
5'  cucugu cuuuca  gcu cu uacagugcugc uug  gcg u
    |||||| ||||||  ||| || ||||||||||| |||  |||  
3'  gagaca gaaagu  cgg ga auguuacgacg aac  ugu c
   -      a      au   -  c           -   --   a 

Deep sequencing

541056 reads, 6.56e+03 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 89095068-89095150 [-]
• Overlapping transcripts:

  sense

  ENSGALT00000025750 ; PANK2-201; intron 5

Database links

• EntrezGene:
• RNAcentral:URS000075E418_9031
• miRBase Tracker:MI0001213

Mature sequence gga-miR-103-2-5p

• Accession: MIMAT0026519
• Sequence: 14 - agcuucuuuacagugcugccuug - 36
• Deep sequencing: 22 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Predicted targets:
  • TargetScanVert:gga-miR-103-2-5p
  • miRDB:gga-miR-103-2-5p

Mature sequence gga-miR-103-3p

• Accession: MIMAT0001145
• Sequence: 51 - agcagcauuguacagggcuauga - 73
• Deep sequencing: 1082110 reads, 5 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000476BE1_9031
• Predicted targets:
  • TargetScanVert:gga-miR-103-3p
  • miRDB:gga-miR-103-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. " McBride D, Carre W, Law A, Clinton M Unpublished.
3. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).