Stem-loop gma-MIR160a

Accession

MI0001774

Description

Glycine max gma-MIR160a precursor miRNA

Literature search

25 open access papers mention gma-MIR160a
(67 sentences)

Sequence

474377 reads, 1100.0 reads per million, 178 experiments

caugcauacauauguguaugUGCCUGGCUCCCUGUAUGCCAUuuguagagcucaucgaagcaucaaugaccuuuguggaugGCGUAUGAGGAGCCAAGCAUAUuucauauacauacaug
((((.((...((((((.((((((.(((((((.((((((((((((((((((.((((.((....)).)))).)))))))))))))))))).))))))).))))))..)))))).)).))))

Structure

    c  aca      -u      C       C                  c    c  a 
caug au   uaugug  augUGC UGGCUCC UGUAUGCCAUuuguagag ucau ga g
|||| ||   ||||||  |||||| ||||||| |||||||||||||||||| |||| ||  
guac ua   auauac  UAUACG ACCGAGG GUAUGCGguagguguuuc agua cu c
    a  --c      uu      A       A                  c    a  a 

Annotation confidence High

Genome context

chr10: 44431708-44431826 [-]

Mature gma-miR160a-5p

• Accession: MIMAT0001676
• Description: Glycine max gma-miR160a-5p mature miRNA
• Sequence: 21 - UGCCUGGCUCCCUGUAUGCCAU - 42
• Evidence: experimental ; 454 [1]

Mature gma-miR160a-3p

• Accession: MIMAT0022889
• Description: Glycine max gma-miR160a-3p mature miRNA
• Sequence: 82 - GCGUAUGAGGAGCCAAGCAUAU - 103
• Evidence: experimental ; Illumina [3]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553