miRBase entry: gma-MIR396b

Stem-loop gma-MIR396b


Accession
MI0001786
Description
Glycine max gma-MIR396b precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
27 open access papers mention gma-MIR396b
(175 sentences)

Sequence

cucaaguccuggucaugcuuUUCCACAGCUUUCUUGAACUUcuuaugcaucuuauaucucuccaccuccaggauuuuaagcccuagaaGCUCAAGAAAGCUGUGGGAGAauauggcaauucaggcu
....((.((((((((((.(((((((((((((((((((.(((((...((.......(((.((........))))).....))...))))).))))))))))))))))))).))))))....))))))

Structure
cuca  u    ----      c                   A     uau  aucuuau   u  cca 
    ag ccug    gucaug uuUUCCACAGCUUUCUUGA CUUcu   gc       auc cu   c
    || ||||    |||||| ||||||||||||||||||| |||||   ||       ||| ||    
    uc ggac    cgguau AGAGGGUGUCGAAAGAACU Gaaga   cg       uag ga   c
----  -    uuaa      a                   C     ucc  --aauuu   -  ccu 


Annotation confidence Not enough data
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Genome context
chr13: 27517027-27517152 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gma-MIR396b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gma-miR396b-5p

Accession MIMAT0001688
Description Glycine max gma-miR396b-5p mature miRNA
Sequence 21 - UUCCACAGCUUUCUUGAACUU - 41
Evidence experimental
454 [1], Illumina [3]

Mature gma-miR396b-3p

Accession MIMAT0020923
Description Glycine max gma-miR396b-3p mature miRNA
Sequence 89 - GCUCAAGAAAGCUGUGGGAGA - 109
Evidence experimental
Illumina [3-4]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  3. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307

  4. PubMed ID: 22156213
    MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
    "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
    "Genes Dev (2011) 25:2540-2553