Stem-loop gma-MIR1508a

Accession

MI0007220

Description

Glycine max gma-MIR1508a precursor miRNA

Gene family

MIPF0000719; MIR1508

Literature search

10 open access papers mention gma-MIR1508a
(24 sentences)

Sequence

aauugcuauccaacugcuauucccauuucuaaaccuuguuacacgagcaucuugaucaauggUCUAGAAAGGGAAAUAGCAGUUGaguggugcuu
....(((((.((((((((((((((.((((((.((((((.....((((...))))..))).))).))))))))).))))))))))).)))))....

Structure

aauu     c           -   a      a   -   uuaca    c 
    gcuau caacugcuauu ccc uuucua acc uug     cgag  
    ||||| ||||||||||| ||| |||||| ||| |||     |||| a
    uggug GUUGACGAUAA GGG AAAGAU Ugg aac     guuc  
uucg     a           A   -      C   u   ---ua    u 

Annotation confidence Not enough data

Genome context

chr16: 33378856-33378950 [+]

Mature gma-miR1508a

• Accession: MIMAT0007366
• Description: Glycine max gma-miR1508a mature miRNA
• Sequence: 63 - UCUAGAAAGGGAAAUAGCAGUUG - 85
• Evidence: experimental ; 454 [1,3], Northern [1], cloned [2], Illumina [4]

References

1. PubMed ID: 18402695
   Novel and nodulation-regulated microRNAs in soybean roots
   Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
   BMC Genomics (2008) 9:160


2. PubMed ID: 19084500
   Identification and expression analysis of miRNAs from nitrogen-fixing soybean nodules
   "Wang Y, Li P, Cao X, Wang X, Zhang A, Li X"
   "Biochem Biophys Res Commun (2009) 378:799-803


3. PubMed ID: 21504877
   MicroRNAs in the shoot apical meristem of soybean
   "Wong CE, Zhao YT, Wang XJ, Croft L, Wang ZH, Haerizadeh F, Mattick JS, Singh MB, Carroll BJ, Bhalla PL"
   "J Exp Bot (2011) 62:2495-2506


4. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553