Stem-loop dya-mir-311a

Accession

MI0009664

Description

Drosophila yakuba dya-mir-311a precursor miRNA

Sequence

uagauaguuuugCGGACGGUAUCUGCGUCAAUAUUuccuuguuagaauaUAUUGCACAUUCACCGGCCUGAaaauaucaa
..((((.((((..((.((((...((.(.(((((((((.......))).))))))).))...)))).))..))))))))..

Structure

ua    g    gC  A    AUC  C U      -   cu 
  gaua uuuu  GG CGGU   UG G CAAUAU Uuc  u
  |||| ||||  || ||||   || | |||||| |||  g
  cuau aaaA  CC GCCA   AC C GUUAUa aag  u
aa    -    GU  G    CUU  A -      u   au 

Annotation confidence Low

Genome context

chr2R: 12724827-12724906 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from dya-mir-311a

Mature dya-miR-311a-3p

• Accession: MIMAT0009091
• Description: Drosophila yakuba dya-miR-311a-3p mature miRNA
• Sequence: 50 - UAUUGCACAUUCACCGGCCUGA - 71
• Evidence: experimental ; Illumina [2]

Mature dya-miR-311a-5p

• Accession: MIMAT0037349
• Description: Drosophila yakuba dya-miR-311a-5p mature miRNA
• Sequence: 13 - CGGACGGUAUCUGCGUCAAUAUU - 35
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17994087
   Evolution of genes and genomes on the Drosophila phylogeny
   "Clark AG, Eisen MB, Smith DR, Bergman CM, Oliver B, Markow TA, Kaufman TC, Kellis M, Gelbart W, Iyer VN, Pollard DA, Sackton TB, Larracuente AM, Singh ND, Abad JP, Abt DN, Adryan B, Aguade M, Akashi H, Anderson WW, Aquadro CF, Ardell DH, Arguello R, Artie"
   "Nature (2007) 450:203-218


2. PubMed ID: 24985917
   Diversity of miRNAs, siRNAs, and piRNAs across 25 Drosophila cell lines
   "Wen J, Mohammed J, Bortolamiol-Becet D, Tsai H, Robine N, Westholm JO, Ladewig E, Dai Q, Okamura K, Flynt AS, Zhang D, Andrews J, Cherbas L, Kaufman TC, Cherbas P, Siepel A, Lai EC"
   "Genome Res (2014) 24:1236-1250