Stem-loop osa-MIR2871a

Accession

MI0013035

Description

Oryza sativa osa-MIR2871a precursor miRNA

Gene family

MIPF0000986; MIR2871

Literature search

2 open access papers mention osa-MIR2871a
(3 sentences)

Sequence

84 reads, 65 reads per million, 2 experiments

caugguGACCGUAGAAACUAGCAUAGAAAAaaguagauaucucaagugacuuuguucauuuacguugggauagacaaguaacuaccuuuucUAUUUUAGUUUCUAUGGUCACuuugguggc
((.((((((((((((((((((.((((((((..((((.((((((((((((..........)))).)))))))).........)))).)))))))).)))))))))))))))))).)).....

Structure

-----  u                  C        aa    --------a        -    cuuu 
     ca gguGACCGUAGAAACUAG AUAGAAAA  guag         uaucucaa guga    g
     || |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
     gu uCACUGGUAUCUUUGAUU UAUcuuuu  cauc         auaggguu cauu    u
cggug  u                  U        -c    aaugaacag        g    uacu 

Annotation confidence Not enough data

Genome context

Chr5: 3877013-3877133 [+]

Mature osa-miR2871a-3p

• Accession: MIMAT0013820
• Description: Oryza sativa osa-miR2871a-3p mature miRNA
• Sequence: 92 - UAUUUUAGUUUCUAUGGUCAC - 112
• Evidence: experimental ; Illumina [1]

Mature osa-miR2871a-5p

• Accession: MIMAT0020948
• Description: Oryza sativa osa-miR2871a-5p mature miRNA
• Sequence: 7 - GACCGUAGAAACUAGCAUAGAAAA - 30
• Evidence: experimental ; Illumina [2-4]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547


3. PubMed ID: 21679406
   Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa
   Wei LQ, Yan LF, Wang T
   Genome Biol (2011) 12:R53


4. PubMed ID: 21791435
   Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)
   "Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q"
   "J Exp Bot (2011) 62:4943-4954