Stem-loop sequence osa-MIR2871a

Accession MI0013035
Description Oryza sativa miR2871a stem-loop
Gene family MIPF0000986; MIR2871
Stem-loop 
-----  u                  c        aa    --------a        -    cuuu 
     ca ggugaccguagaaacuag auagaaaa  guag         uaucucaa guga    g
     || |||||||||||||||||| ||||||||  ||||         |||||||| ||||     
     gu ucacugguaucuuugauu uaucuuuu  cauc         auaggguu cauu    u
cggug  u                  u        -c    aaugaacag        g    uacu
Get sequence
Deep sequencing
685 reads, 3 experiments
Genome context
Coordinates (MSU7) Overlapping transcripts
Chr5: 3877013-3877133 [+]
intergenic

Mature sequence osa-miR2871a-5p

Accession MIMAT0020948
Sequence

7 -  

gaccguagaaacuagcauagaaaa

 - 30

Get sequence
Deep sequencing 557 reads, 2 experiments
Evidence experimental; Solexa [2-4]

Mature sequence osa-miR2871a-3p

Accession MIMAT0013820
Previous IDs osa-miR2871a
Sequence

92 -  

uauuuuaguuucuauggucac

 - 112

Get sequence
Deep sequencing 128 reads, 3 experiments
Evidence experimental; Solexa [1]

References

1
PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).
2
PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).
3
PMID:21791435 "Differential expression of the microRNAs in superior and inferior spikelets in rice (Oryza sativa)" Peng T, Lv Q, Zhang J, Li J, Du Y, Zhao Q J Exp Bot. 62:4943-4954(2011).
4
PMID:21679406 "Deep sequencing on genome-wide scale reveals the unique composition and expression patterns of microRNAs in developing pollen of Oryza sativa" Wei LQ, Yan LF, Wang T Genome Biol. 12:R53(2011).