Stem-loop osa-MIR1863b

Accession

MI0013050

Description

Oryza sativa osa-MIR1863b precursor miRNA

Literature search

3 open access papers mention osa-MIR1863b
(6 sentences)

Sequence

88 reads, 61 reads per million, 2 experiments

caauagcaaugcaucaguuacguuuccuacauaguuacaugguaucagagcugaaauccuaaaccaaugaauguuuauccagcaccaauccccugcugcuaggagcuguagcucucggggcaguaccuaauccgcugcugaucuguuucuagucaugaaaagcacugugaucuguaagugcuugcugcaugccaugguuuugcccaauucuauggccaucguuggauucgugaccugacagugaugcaauaaucagugauggauuuguguuggcucuacuugggguugaggaucuuagcuguuAGCUCUGAUACCAUGUUAACUGUUuAGAGACUUGGCUGAUGCAUUACUuuuggaaac
(((.((.(((((((((((((.(((((.((.((((((((((((((((((((((((.(((((.((((....((.((....(((((((........(((((((.(((((....)))))...)))))))...((((((.((((((((((((....(((((((.(((((((..........))))))).......(((((((..((....))..))))))).(((....))))))))))..)))))..........))))))).)))))).)))))))....))))..)))).)))))........))))))))))))))))).))))))).))))))).))))))))))))).)).))).....

Structure

-----   u  c             c     c  c       -                 -------a     a    aaug  u  uuau       caauccccugcugcuaggagcuguagcucucggggcaguaccu      c       ----------     ucua       aaagcacugugaucuguaagugcuugcugcaug 
     caa ag aaugcaucaguua guuuc ua auaguua caugguaucagagcuga        auccu aacc    aa gu    ccagcac                                           aauccg ugcugau          cuguu    gucauga                                 c
     ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||    || ||    |||||||                                           |||||| |||||||          |||||    |||||||                                 c
     guu UC UUACGUAGUCGGU CAGAG Au UGUCAAU GUACCAUAGUCUCGAuu        uagga uugg    uu ca    gguugug                                           uuaggu gugacua          gacag    cagugcu                                 a
caaag   u  A             U     -  U       U                 gucgauuc     g    --gg  -  ucuc       ------------------------------------------u      a       auaacguagu     --uc       uagguugcuaccgguaucuuaacccguuuuggu 

Annotation confidence Low

Genome context

Chr12: 4867257-4867616 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from osa-MIR1863b

Mature osa-miR1863b

• Accession: MIMAT0013836
• Description: Oryza sativa osa-miR1863b mature miRNA
• Sequence: 304 - AGCUCUGAUACCAUGUUAACUGUU - 327
• Evidence: experimental ; Illumina [1]

Mature osa-miR1863b.2

• Accession: MIMAT0020950
• Description: Oryza sativa osa-miR1863b.2 mature miRNA
• Sequence: 329 - AGAGACUUGGCUGAUGCAUUACU - 351
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19903869
   Rice MicroRNA effector complexes and targets
   "Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y"
   "Plant Cell (2009) 21:3421-3435


2. PubMed ID: 21525786
   Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus
   "Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D"
   "RNA Biol (2011) 8:538-547