Stem-loop sequence osa-MIR1863b

Accession

MI0013050 (change log)

Description

Oryza sativa miR1863b stem-loop

Gene family

MIPF0000932; MIR1863

Literature search

3 open access papers mention osa-MIR1863b
(6 sentences)

Stem-loop

   -----   u  c             c     c  c       -                 -------a     a    aaugaau  uuau       caauccccugcugcuaggagcuguagcucucggggcaguaccuaauccgcugcugaucuguuucuagucaugaaaagcacugugaucug 
5'      caa ag aaugcaucaguua guuuc ua auaguua caugguaucagagcuga        auccu aacc       gu    ccagcac                                                                                         u
        ||| || ||||||||||||| ||||| || ||||||| |||||||||||||||||        ||||| ||||       ||    |||||||                                                                                         a
3'      guu uc uuacguagucggu cagag au ugucaau guaccauagucucgauu        uagga uugg       ca    gguugug                                                                                         a
   caaag   u  a             u     -  u       u                 gucgauuc     g    ---gguu  ucuc       uuuagguagugacuaauaacguagugacaguccagugcuuagguugcuaccgguaucuuaacccguuuugguaccguacgucguucgug 

Deep sequencing

584 reads, 250 reads per million, 2 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (MSU7): Chr12: 4867257-4867616 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from osa-MIR1863b

• osa-MIR1863b: Chr12: 4867257-4867616 [+]
• osa-MIR1863c: Chr12: 4869207-4869497 [+]

Database links

• miRBase Tracker:MI0013050

Mature sequence osa-miR1863b

• Accession: MIMAT0013836
• Sequence: 304 - agcucugauaccauguuaacuguu - 327
• Deep sequencing: 433 reads, 2 experiments
• Evidence: experimental; Illumina [1]

Mature sequence osa-miR1863b.2

• Accession: MIMAT0020950
• Sequence: 329 - agagacuuggcugaugcauuacu - 351
• Deep sequencing: 145 reads, 2 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS00004C47CE_39947

References

1. PMID:19903869 "Rice MicroRNA effector complexes and targets" Wu L, Zhang Q, Zhou H, Ni F, Wu X, Qi Y Plant Cell. 21:3421-3435(2009).
2. PMID:21525786 "Genome-wide discovery and analysis of microRNAs and other small RNAs from rice embryogenic callus" Chen CJ, liu Q, Zhang YC, Qu LH, Chen YQ, Gautheret D RNA Biol. 8:538-547(2011).