Stem-loop cqu-mir-100

Accession

MI0013585

Description

Culex quinquefasciatus cqu-mir-100 precursor miRNA

Gene family

MIPF0000033; mir-10

Sequence

aacagcauuucccauuugcgggAACCCGUAGAUCCGAACUUGUGcugcccuuuuuacacguuaCAAGGCCGGAUAUAUGGGAUCcugccgauggguggaaaaagcaucga
....((.(((((((((.((((((.((((((.(((((..((((((.((...........)).))))))..))))).)))))).)))))).))))))....))).)).....

Structure

-aaca  a   ----      u      A      G     AA      c  cccu 
     gc uuu    cccauu gcgggA CCCGUA AUCCG  CUUGUG ug    u
     || |||    |||||| |||||| |||||| |||||  |||||| ||    u
     cg aaa    ggguag cgucCU GGGUAU UAGGC  GAACau gc    u
agcua  a   aggu      c      A      A     CG      u  acau 

Annotation confidence Not enough data

Genome context

supercont3.4: 271392-271501 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from cqu-mir-100

Mature cqu-miR-100-5p

• Accession: MIMAT0014387
• Description: Culex quinquefasciatus cqu-miR-100-5p mature miRNA
• Sequence: 23 - AACCCGUAGAUCCGAACUUGUG - 44
• Evidence: experimental ; Illumina [1]

Mature cqu-miR-100-3p

• Accession: MIMAT0014388
• Description: Culex quinquefasciatus cqu-miR-100-3p mature miRNA
• Sequence: 64 - CAAGGCCGGAUAUAUGGGAUC - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20167119
   Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
   Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
   BMC Genomics (2010) 11:119