Stem-loop tgu-mir-2987

Accession

MI0013686

Description

Taeniopygia guttata tgu-mir-2987 precursor miRNA

Literature search

1 open access papers mention tgu-mir-2987
(2 sentences)

Sequence

uuaggccgaaagAGCAGCCAGAGCCUUCCCUCAaugucuguuuuacagAGAGCAAGGCUGAGGCUGUUCUcagagccuga
(((((((...(((((((((..((((((..(((....(((((...)))))))).))))))..)))))))))..).))))))

Structure

      - gaa         AG      CC   Aaug     u 
uuaggc c   agAGCAGCC  AGCCUU  CUC    ucugu  
|||||| |   |||||||||  ||||||  |||    ||||| u
aguccg g   UCUUGUCGG  UCGGAA  GAG    Agaca  
      a -ac         AG      -C   ----     u 

Annotation confidence Low

Genome context

chr12: 776733-776812 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from tgu-mir-2987

Mature tgu-miR-2987-3p

• Accession: MIMAT0014497
• Description: Taeniopygia guttata tgu-miR-2987-3p mature miRNA
• Sequence: 49 - AGAGCAAGGCUGAGGCUGUUCU - 70
• Evidence: experimental ; Illumina [1-2]

Mature tgu-miR-2987-5p

• Accession: MIMAT0026971
• Description: Taeniopygia guttata tgu-miR-2987-5p mature miRNA
• Sequence: 13 - AGCAGCCAGAGCCUUCCCUCA - 33
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 20360741
   The genome of a songbird
   "Warren WC, Clayton DF, Ellegren H, Arnold AP, Hillier LW, Kunstner A, Searle S, White S, Vilella AJ, Fairley S, Heger A, Kong L, Ponting CP, Jarvis ED, Mello CV, Minx P, Lovell P, Velho TA, Ferris M, Balakrishnan CN, Sinha S, Blatti C, London SE, Li Y, Li"
   "Nature (2010) 464:757-762


2. PubMed ID: 23268654
   Genome-wide annotation and analysis of zebra finch microRNA repertoire reveal sex-biased expression
   Luo GZ, Hafner M, Shi Z, Brown M, Feng GH, Tuschl T, Wang XJ, Li X
   BMC Genomics (2012) 13:727