miRBase entry: vvi-MIR3631a

Stem-loop vvi-MIR3631a


Accession
MI0016027
Description
Vitis vinifera vvi-MIR3631a precursor miRNA
Gene family
MIPF0001100; MIR3631

Literature search
2 open access papers mention vvi-MIR3631a
(4 sentences)

Sequence

505 reads, 19 reads per million, 2 experiments
aggugguguuuggucuuugguugaauagaaaaagucaaaauauuuggcuuuuucuauucagcuaaaaguaaCAUGUUGACAUCAUCCAAUAUAauuaaacugaaccuauugauaacaaguucauuuuagcUAUAUUGGAUGAUGUCAACAAguuacuuuuaacugaauagaaaaagccaaauauuuuggcuuuuucuauuuagccaaaaaacaaacaccaccu
((((((((((((...((((((((((((((((((((((((((((((((((((((((((((((.((((((((((.((((((((((((((((((((.(((((.(((((...(((....)))))))).))))).)))))))))))))))))))).)))))))))).))))))))))))))))))))))))))))))))))))))))))))))...))))))))))))

Structure
            guc                                              c          A                    a     c     cua   a 
aggugguguuug   uuugguugaauagaaaaagucaaaauauuuggcuuuuucuauucag uaaaaguaaC UGUUGACAUCAUCCAAUAUA uuaaa ugaac   uug u
||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| |||||   |||  
uccaccacaaac   aaaccgauuuaucuuuuucgguuuuauaaaccgaaaaagauaaguc auuuucauug ACAACUGUAGUAGGUUAUAU gauuu acuug   aac a
            aaa                                              a          A                    c     u     ---   a 


Annotation confidence Low
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature vvi-miR3631a-5p

Accession MIMAT0018029
Description Vitis vinifera vvi-miR3631a-5p mature miRNA
Sequence 72 - CAUGUUGACAUCAUCCAAUAUA - 93
Evidence experimental
Illumina [1]

Mature vvi-miR3631a-3p

Accession MIMAT0018030
Description Vitis vinifera vvi-miR3631a-3p mature miRNA
Sequence 131 - UAUAUUGGAUGAUGUCAACAA - 151
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20230504
    Identification of grapevine microRNAs and their targets using high-throughput sequencing and degradome analysis
    "Pantaleo V, Szittya G, Moxon S, Miozzi L, Moulton V, Dalmay T, Burgyan J"
    "Plant J (2010) 62:960-976