Stem-loop sequence bta-mir-2285n-6

Accession

MI0022311 (change log)

Description

Bos taurus miR-2285n-6 stem-loop

Gene family

MIPF0000747; mir-2284

Literature search

11 open access papers mention bta-mir-2285n-6
(15 sentences)

Stem-loop

   c   g    -a     aaa  gc  a      c   u     
5'  ugg uugg  caaaa   uu  uc gguuuu cca gaga 
    ||| ||||  |||||   ||  || |||||| ||| ||| u
3'  acc aacc  guuuu   ag  ag ccaaaa ggu cuug 
   a   g    gg     -ca  ua  c      a   -     

Deep sequencing

5723 reads, 143 reads per million, 77 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Btau_5.0.1; GCA_000003205.6): chr14: 83772102-83772181 [+]
• Overlapping transcripts:

  antisense

  ENSBTAT00000037135 ; ENPP2-201; intron 9

Database links

• miRBase Tracker:MI0022311

Mature sequence bta-miR-2285n

• Accession: MIMAT0025531
• Sequence: 49 - aaaaacccgaaugaacuuuugg - 70
• Deep sequencing: 24101 reads, 77 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:bta-miR-2285n

References

1. PMID:21912509 "Solexa sequencing of novel and differentially expressed microRNAs in testicular and ovarian tissues in Holstein cattle" Huang J, Ju Z, Li Q, Hou Q, Wang C, Li J, Li R, Wang L, Sun T, Hang S, Gao Y, Hou M, Zhong J Int J Biol Sci. 7:1016-1026(2011).