Stem-loop mdm-MIR167j

Accession

MI0023035

Description

Malus domestica mdm-MIR167j precursor miRNA

Gene family

MIPF0000023; MIR167_1

Literature search

11 open access papers mention mdm-MIR167j
(189 sentences)

Sequence

agugugcauauguucuuaucaugcacugguagcaguUGAAGCUGCCAGCAUGAUCUUAuaacucccuacuucguuuagggaagcucagaucaucuggcaguuucaccuguuguugguagcaugagaccaucaaaacccu
((.((....(((.((...(((((((((((((((((.((((((((((((.(((((((......((((((.......)))))).....))))))))))))))))))).))))))))))).)))))))).)))....)).))

Structure

  u  gcau   u  uua      -           u            C       UAuaac      cu 
ag gu    aug uc   ucaugc acugguagcag UGAAGCUGCCAG AUGAUCU      ucccua  u
|| ||    ||| ||   |||||| ||||||||||| |||||||||||| |||||||      ||||||  c
uc ca    uac ag   aguacg ugguuguuguc acuuugacgguc uacuaga      agggau  g
  c  aaac   c  ---      a           c            -       -cucga      uu 

Annotation confidence Not enough data

Genome context

MDC017525.223: 4367-4505 [+]

Mature mdm-miR167j

• Accession: MIMAT0025931
• Description: Malus domestica mdm-miR167j mature miRNA
• Sequence: 37 - UGAAGCUGCCAGCAUGAUCUUA - 58
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47