Stem-loop mdm-MIR394a

Accession

MI0023082

Description

Malus domestica mdm-MIR394a precursor miRNA

Literature search

3 open access papers mention mdm-MIR394a
(13 sentences)

Sequence

ucacguggguuuugcaaagaguuucuuacagaguucuUUGGCAUUCUGUCCACCUCCccccucucucugugugucuguggcucaauggauggaggugggcauacugccaacagagcucuguuggcuucucuuuguaaaacccccguga
(((((.(((((((((((((((...((.((((((((((((((((...(((((((((((..((........((.(((...))).))..))..)))))))))))...)))))).)))))))))).))...))))))))))))))).)))))

Structure

     u               uuu  u          -      UUC           cc  ucucucug  u   u 
ucacg ggguuuugcaaagag   cu acagaguucu UUGGCA   UGUCCACCUCC  cc        ug guc  
||||| |||||||||||||||   || |||||||||| ||||||   |||||||||||  ||        || ||| g
agugc cccaaaauguuucuc   gg ugucucgaga aaccgu   acggguggagg  gg        ac cgg  
     c               uuc  u          c      cau           ua  ------ua  u   u 

Annotation confidence Low

Genome context

MDC016924.31: 605-752 [+]

Mature mdm-miR394a

• Accession: MIMAT0025978
• Description: Malus domestica mdm-miR394a mature miRNA
• Sequence: 38 - UUGGCAUUCUGUCCACCUCC - 57
• Evidence: experimental ; miRNAseq [1]

References

1. PubMed ID: 22704043
   Apple miRNAs and tasiRNAs with novel regulatory networks
   Xia R, Zhu H, An YQ, Beers EP, Liu Z
   Genome Biol (2012) 13:R47