miRBase entry: mdm-MIR395e

Stem-loop mdm-MIR395e


Accession
MI0023088
Description
Malus domestica mdm-MIR395e precursor miRNA
Gene family
MIPF0000016; MIR395

Literature search
5 open access papers mention mdm-MIR395e
(49 sentences)

Sequence

gaaucagguguccccuagaguucccccgaacacuucauuaagaucgaugcauaaguucuuuguauauuaaaugaugauugcaccaucucuaCUGAAGUGUUUGGGGGAACUCcgggugucauuugauc
..((((((((.((((..((((((((((((((((((((.((((((.(.((((...(((.((((.....)))).)))...))))).)))).)).)))))))))))))))))))).))).).)))))))).

Structure
ga        u -   ua                    u  -    c a    uaa   c    u 
  aucaggug c ccc  gaguucccccgaacacuuca ua agau g ugca   guu uuug a
  |||||||| | |||  |||||||||||||||||||| || |||| | ||||   ||| |||| u
  uaguuuac g ggg  CUCAAGGGGGUUUGUGAAGU au ucua c acgu   uag aaau a
-c        u u   -c                    C  c    c -    uag   u    u 


Annotation confidence Not enough data
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Genome context
MDC003846.250: 1344-1471 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mdm-MIR395e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mdm-miR395e

Accession MIMAT0025984
Description Malus domestica mdm-miR395e mature miRNA
Sequence 92 - CUGAAGUGUUUGGGGGAACUC - 112
Evidence experimental
miRNAseq [1]

References

  1. PubMed ID: 22704043
    Apple miRNAs and tasiRNAs with novel regulatory networks
    Xia R, Zhu H, An YQ, Beers EP, Liu Z
    Genome Biol (2012) 13:R47