Stem-loop sly-MIR394

Accession

MI0029102

Description

Solanum lycopersicum sly-MIR394 precursor miRNA

Literature search

7 open access papers mention sly-MIR394
(35 sentences)

Sequence

caaucuugauuuucaugaagauuucucaaaggguuccuuacauaguucuUUGGCAUUCUGUCCACCUCCuuuaccuucauaaucuucuauuuuuuuagaaaaauaauuuuuguuauuauuuuuuuuaaaaaauggAGGUGGGCAUACUGUCAACAgauuuguguuaguuucucuuugugaaaucuucuugauguuaauug
.....(((((..(((.(((((((((.(((((((...((.((((((.(((((((((...(((((((((((...................(((((((.(((((((((((.......))))))))))).))))))))))))))))))...)))))).))).)))))).))...))))))).))))))))).))).)))))...

Structure

caauc     uu   u         u       uuc  u      u   -      UUC           uuuaccuucauaaucuucu       u           uu 
     uugau  uca gaagauuuc caaaggg   cu acauag ucu UUGGCA   UGUCCACCUCC                   auuuuuu agaaaaauaau  u
     |||||  ||| ||||||||| |||||||   || |||||| ||| ||||||   |||||||||||                   ||||||| |||||||||||  u
     aauug  agu cuucuaaag guuucuc   ga uguguu agA AACUGU   ACGGGUGGAgg                   uaaaaaa uuuuuuuauua  g
--guu     -u   u         u       uuu  u      u   C      CAU           -------------------       u           uu 

Annotation confidence Not enough data

Genome context

chr4: 65891077-65891276 [+]

Mature sly-miR394-5p

• Accession: MIMAT0035437
• Description: Solanum lycopersicum sly-miR394-5p mature miRNA
• Sequence: 50 - UUGGCAUUCUGUCCACCUCC - 69
• Evidence: experimental ; Illumina [1]

Mature sly-miR394-3p

• Accession: MIMAT0035438
• Description: Solanum lycopersicum sly-miR394-3p mature miRNA
• Sequence: 136 - AGGUGGGCAUACUGUCAACA - 155
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24376253
   Global and local perturbation of the tomato microRNA pathway by a trans-activated DICER-LIKE 1 mutant
   Kravchik M, Sunkar R, Damodharan S, Stav R, Zohar M, Isaacson T, Arazi T
   J Exp Bot (2014) 65:725-739