Stem-loop sequence hsa-mir-219a-1

AccessionMI0000296 (change log)
Previous IDshsa-mir-219
Symbol HGNC:MIR219A1
DescriptionHomo sapiens miR-219a-1 stem-loop
Gene family MIPF0000044; mir-219
Literature search

70 open access papers mention hsa-mir-219a-1
(248 sentences)

   -    c --------c    c       cu   u     a  g         a   uau 
5'  ccgc c         gggc gcggcuc  gau gucca ac caauucucg guc   g
    |||| |         |||| |||||||  ||| ||||| || ||||||||| |||   g
3'  ggcg g         cccg cgccgag  cug caggu ug guugagagc cgg   c
   g    a cuccaaacc    c       cc   -     c  a         -   ccu 
Get sequence
Deep sequencing
2679 reads, 0 reads per million, 144 experiments
Confidence Annotation confidence: high
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This human miRNA was predicted by computational methods using conservation with mouse and Fugu rubripes sequences [1]. Expression of the 5' excised miR has been validated in zebrafish, and the 5' end mapped by PCR [2]. The mature products were later validated in human [3]. Two hairpin precursor structures are predicted, mir-219-1 on chromosome 6 (MI0000296) and mir-219-2 on chromosome 9 (MI0000740) [2].

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr6: 33207835-33207944 [+]
Database links

Mature sequence hsa-miR-219a-5p

Accession MIMAT0000276
Previous IDshsa-miR-219

21 - 


 - 41

Get sequence
Deep sequencing3742 reads, 132 experiments
Evidence experimental; cloned [3]
Database links
Predicted targets

Mature sequence hsa-miR-219a-1-3p

Accession MIMAT0004567

62 - 


 - 83

Get sequence
Deep sequencing699 reads, 91 experiments
Evidence experimental; cloned [3]
Database links
Predicted targets


PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).