Accession
MI0000413
Description
Drosophila melanogaster
dme-mir-9c precursor miRNA
Gene family
MIPF0000014;
mir-9
Literature search
24 open access papers mention dme-mir-9c
(94 sentences)
(94 sentences)
Sequence
1225186
reads,
13645
reads per million, 49 experiments
auuuuugcuguuUCUUUGGUAUUCUAGCUGUAGAuuguuucacgcacauuguauaucaucUAAAGCUUUUAUACCAAAGCUCcagcuuaaau
((((..((((...(((((((((...((((.(((((.(....(((.....)))....)))))).))))...)))))))))...))))..))))
((((..((((...(((((((((...((((.(((((.(....(((.....)))....)))))).))))...)))))))))...))))..))))
Structure
uu uuU UCU G u uuuc c
auuu gcug CUUUGGUAU AGCU UAGAu g acg a
|||| |||| ||||||||| |||| ||||| | ||| c
uaaa cgac GAAACCAUA UCGA AUcua c ugu a
uu CUC UUU A - uaua u
Annotation confidence
High
Do you think this miRNA is real?
Comments
Lai et al. predicted this sequence based on conservation in D. pseudoobscura, but did not verify expression [2]. Aravin et al. describe identification and mapping of the ends of the excised sequence by cloning [1].
Genome context
chr2L: 16697924-16698015 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dme-mir-9c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-9c-5p
| Accession | MIMAT0000392 |
| Description | Drosophila melanogaster dme-miR-9c-5p mature miRNA |
| Sequence | 13 - UCUUUGGUAUUCUAGCUGUAGA - 34 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-9c-3p
| Accession | MIMAT0020828 |
| Description | Drosophila melanogaster dme-miR-9c-3p mature miRNA |
| Sequence | 61 - UAAAGCUUUUAUACCAAAGCUC - 82 |
| Evidence | not_experimental |
| Database links |
|
References
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