Search results

There are 222 hairpins in the mir-9 family

Name Accession RPM Chromosome Start End Strand Confidence
cel-mir-79 MI0000050 5191 chrI 9332946 9333043 + High
dme-mir-9a MI0000129 8876 chr3L 19565131 19565208 + High
mmu-mir-9-2 MI0000157 12733 chr13 83738814 83738885 + High
dme-mir-79 MI0000374 20569 chr2L 16698554 16698650 + High
dme-mir-9c MI0000413 13645 chr2L 16697924 16698015 + High
dme-mir-9b MI0000415 5894 chr2L 16698744 16698834 + High
hsa-mir-9-1 MI0000466 2789 chr1 156420341 156420429 - High
hsa-mir-9-2 MI0000467 2776 chr5 88666853 88666939 - High
hsa-mir-9-3 MI0000468 2765 chr15 89368017 89368106 + High
cbr-mir-79 MI0000517 - chrI 1849413 1849505 + -
mmu-mir-9-1 MI0000720 12733 chr3 88215598 88215686 + High
mmu-mir-9-3 MI0000721 12777 chr7 79505264 79505353 + High
rno-mir-9a-1 MI0000838 224371 chr2 187582799 187582887 + High
rno-mir-9a-3 MI0000839 224306 chr1 141229353 141229442 + High
rno-mir-9a-2 MI0000840 224368 chr2 11884671 11884757 + High
gga-mir-9-2 MI0001283 54839 chrZ 60469242 60469328 + High
dps-mir-9a MI0001304 - XR_group8 7634827 7634904 + -
dps-mir-9b MI0001305 - 4_group3 8444194 8444284 + -
dps-mir-9c MI0001306 - 4_group3 8443195 8443286 + -
dps-mir-79 MI0001318 - 4_group3 8443999 8444082 + -
ame-mir-9a MI0001596 - CM000054.5 21811027 21811113 - -
ame-mir-9b MI0001597 - CM000066.5 7887633 7887724 - -
aga-mir-79 MI0001629 - chr3R 5888298 5888391 - -
aga-mir-9a MI0001631 - chr2L 15089290 15089370 - -
aga-mir-9b MI0001634 - chr3R 5887786 5887878 - -
aga-mir-9c MI0001635 - chr3R 5891167 5891256 - -
dre-mir-9-1 MI0001880 2172 chr16 29216274 29216360 + High
dre-mir-9-2 MI0001881 2174 chr10 43535960 43536095 - High
dre-mir-9-4 MI0001882 1225 chr22 18254769 18254855 + High
dre-mir-9-3 MI0001883 2148 chr25 8551240 8551340 - High
dre-mir-9-5 MI0001884 2173 chr5 48170098 48170184 - High
dre-mir-9-6 MI0001885 2151 chr7 14379544 14379631 - High
dre-mir-9-7 MI0001886 1156 chr2 59102169 59102252 - High
ssc-mir-9-1 MI0002462 119 chr4 102543210 102543298 - -
ssc-mir-9-2 MI0002463 119 chr2 98744572 98744658 - -
ptr-mir-9-2 MI0002569 - chr5 26977880 26977966 + -
ggo-mir-9 MI0002570 - chr5 71438773 71438859 - -
lla-mir-9 MI0002571 - None None -
mne-mir-9 MI0002572 - None None -
age-mir-9 MI0002573 - None None -
fru-mir-9-1 MI0003225 - HE602546.1 9462079 9462165 + -
tni-mir-9-1 MI0003226 - 21_random 1842676 1842770 + -
fru-mir-9-2 MI0003321 - HE602555.1 13735668 13735739 - -
tni-mir-9-2 MI0003322 - 12 2246020 2246091 + -
fru-mir-9-4 MI0003373 - HE602554.1 4260758 4260842 + -
tni-mir-9-4 MI0003374 - Un_random 92040526 92040610 + -
fru-mir-9-3 MI0003451 - HE602543.1 6360215 6360296 + -
tni-mir-9-3 MI0003452 - 13 5474095 5474176 + -
gga-mir-9-1 MI0003694 55220 chr28 3623171 3623258 + High
xtr-mir-9a-1 MI0004793 - chr8 111349795 111349882 + -
xtr-mir-9a-2 MI0004794 - chr1 170225657 170225741 - -
xtr-mir-9b MI0004795 - chr1 102034631 102034704 + -
xtr-mir-9-3 MI0004891 - chr3 99283850 99283925 + -
bmo-mir-9a MI0004972 415 NW_004582229.1 9274 9363 - High
sme-mir-79 MI0005153 - Contig2219 55762 55854 - -
mdo-mir-9a-2 MI0005271 25259 chr3 215711846 215711932 + High
mdo-mir-9a-1 MI0005272 25316 chr1 122711570 122711659 - -
ame-mir-79 MI0005742 - CM000066.5 7887622 7887721 + -
oan-mir-9-1 MI0006658 36645 Contig6292 18831 18952 - High
mml-mir-9-1 MI0007584 33271 chr1 131037358 131037446 - High
mml-mir-9-2 MI0007585 33270 chr6 85611111 85611197 - High
mml-mir-9-3 MI0007586 33350 chr7 67381821 67381910 + High
cfa-mir-9-2 MI0008081 - chr3 19997697 19997756 + -
cfa-mir-9-3 MI0008086 - chr3 52410840 52410900 + -
cfa-mir-9-1 MI0008125 - chr7 41509404 41509465 + -
bmo-mir-79 MI0008343 743 NW_004581774.1 31444 31543 + -
ptr-mir-9-1 MI0008875 - chr1 134550541 134550628 - -
tca-mir-9b MI0008935 - Unmapped48 113100 113268 - -
dan-mir-9b MI0008953 - scaffold_12916 15864541 15864628 - -
dan-mir-79 MI0008966 - scaffold_12916 15864720 15864810 - -
dan-mir-9c MI0008993 - scaffold_12916 15865474 15865565 - -
dan-mir-9a MI0008995 - scaffold_13337 17332439 17332516 - -
der-mir-9a MI0009043 - scaffold_4784 19355677 19355754 + -
der-mir-9b MI0009045 - scaffold_4845 19768390 19768478 + -
der-mir-79 MI0009064 - scaffold_4845 19768203 19768294 + -
der-mir-9c MI0009097 - scaffold_4845 19767535 19767626 + -
dgr-mir-9b MI0009122 - scaffold_14978 831298 831386 + -
dgr-mir-79 MI0009123 - scaffold_14978 831100 831175 + -
dgr-mir-9a MI0009129 - scaffold_15110 23882750 23882824 + -
dgr-mir-9c MI0009152 - scaffold_14978 830214 830302 + -
dmo-mir-9b MI0009219 - scaffold_6500 7202307 7202395 + -
dmo-mir-9a MI0009223 - scaffold_6680 14226516 14226590 - -
dmo-mir-9c MI0009236 - scaffold_6500 7201345 7201433 + -
dmo-mir-79 MI0009244 - scaffold_6500 7202139 7202214 + -
dpe-mir-9a MI0009271 - scaffold_48 412967 413044 + -
dpe-mir-9b MI0009301 - scaffold_1 9895313 9895403 + -
dpe-mir-9c MI0009303 - scaffold_1 9894317 9894408 + -
dpe-mir-79 MI0009304 - scaffold_1 9895123 9895199 + -
dse-mir-79 MI0009331 - scaffold_7 345568 345659 + -
dse-mir-9a MI0009362 - scaffold_29 261384 261461 + -
dse-mir-9c MI0009374 - scaffold_7 344907 344998 + -
dse-mir-9b MI0009389 - scaffold_7 345756 345844 + -
dsi-mir-9a MI0009408 - chr3L 18890427 18890504 + -
dvi-mir-9c MI0009491 - scaffold_12963 12863849 12863937 - -
dvi-mir-9b MI0009492 - scaffold_12963 12862861 12862949 - -
dvi-mir-9a MI0009495 - scaffold_13049 13137024 13137098 + -
dvi-mir-79 MI0009543 - scaffold_12963 12863042 12863133 - -
dwi-mir-79-2 MI0009549 - scf2_1100000004945 873577 873652 - -
dwi-mir-9c-1 MI0009559 - scf2_1100000004874 30527 30617 - -
dwi-mir-79-1 MI0009579 - scf2_1100000004874 28872 28947 - -
dwi-mir-9c-2 MI0009591 - scf2_1100000004945 875221 875311 - -
dwi-mir-9a MI0009601 - scf2_1100000004540 842233 842310 + -
dwi-mir-9b-1 MI0009619 - scf2_1100000004874 28642 28731 - -
dwi-mir-9b-2 MI0009621 - scf2_1100000004945 873347 873436 - -
dya-mir-9a MI0009642 - chr3L 20989417 20989494 - -
dya-mir-9c MI0009689 - chr2R 4405077 4405168 - -
dya-mir-9b MI0009691 - chr2R 4404240 4404330 - -
dya-mir-79 MI0009704 - chr2R 4404421 4404512 - -
bta-mir-9-1 MI0009912 179 chr21 21326580 21326669 + High
bta-mir-9-2 MI0009913 179 chr7 90950499 90950585 - High
bmo-mir-9b MI0010004 2 NW_004581774.1 31448 31537 - -
cte-mir-9 MI0010052 - KB300095.1 129658 129758 + -
lgi-mir-9 MI0010105 - KB200521.1 1751408 1751509 + -
sko-mir-9 MI0010148 - GL013644.1 164497 164575 - -
spu-mir-9 MI0010189 - KN915310.1 590803 590903 + -
bfl-mir-9-1 MI0010520 - GG666611.1 400332 400413 + -
bfl-mir-9-2 MI0010521 - GG666846.1 38051 38132 + -
tca-mir-9a MI0010583 - None None -
lmi-mir-9a MI0010645 - None None -
sme-mir-9a MI0010788 - Contig2917 42330 42434 + -
crm-mir-79 MI0011072 - Crem_Contig34 372254 372373 + -
ppc-mir-79 MI0011143 - ABKE03000043.1 294941 295036 - -
ppc-mir-9 MI0011248 - ABKE03000043.1 208379 208483 + -
bmo-mir-9c MI0012193 3998 NW_004581774.1 28981 29088 + High
dpu-mir-9 MI0012252 - GL732524.1 1526193 1526293 + -
isc-mir-79 MI0012285 - DS885551 436490 436590 + -
oan-mir-9-2 MI0012557 35833 1 6581931 6581998 + High
eca-mir-9a MI0012720 17 chr5 41824838 41824916 + -
eca-mir-9a-2 MI0012814 17 chr14 78843147 78843224 + -
bma-mir-9 MI0013326 - Bmal_v3_scaffold1 3047960 3048044 - -
aae-mir-9c MI0013436 287 None None -
aae-mir-79 MI0013500 336 supercont1.785 213262 213357 + High
aae-mir-9a-1 MI0013528 1337 supercont1.517 555107 555187 + -
aae-mir-9a-2 MI0013529 1337 supercont1.517 574909 574989 + -
aae-mir-9b MI0013530 52 supercont1.785 213570 213661 + -
cqu-mir-9 MI0013581 - supercont3.83 64711 64821 + -
cqu-mir-79 MI0013619 - supercont3.83 80583 80657 + -
tgu-mir-9-2 MI0013691 - chrZ 12103943 12104015 - -
tgu-mir-9-1 MI0013692 - chr10 12969737 12969809 - -
api-mir-9a MI0013954 - GL349752.1 521148 521214 - -
nvi-mir-9a MI0014758 - chr3 7543084 7543170 + -
ppy-mir-9-1 MI0014791 - chr1 95096290 95096378 + -
ppy-mir-9-2 MI0014792 - chr5 89207834 89207920 - -
ppy-mir-9-3 MI0014793 - chr15 86027137 86027226 + -
rno-mir-9b-3 MI0015426 7 chr1 141229342 141229456 - -
rno-mir-9b-1 MI0015430 8 chr2 187582790 187582897 - -
rno-mir-9b-2 MI0015439 8 chr2 11884658 11884775 - -
ngi-mir-9a MI0016646 - None None -
nlo-mir-9a MI0016683 - None None -
ame-mir-9c MI0016202 - CM000066.5 1395236 1395374 - -
tca-mir-9d MI0016321 - ChLG5 7174040 7174132 + -
pma-mir-9a-1 MI0017006 - None None -
pma-mir-9a-2 MI0017007 - GL492128.1 47 135 + -
pma-mir-9b MI0017008 - None None -
egr-mir-9 MI0017781 - APAU02000235.1 50908 51000 + -
emu-mir-9 MI0017804 - scaffold_007780 8993270 8993362 + -
asu-mir-9 MI0018532 - None None -
asu-mir-79 MI0018554 - None None -
aca-mir-9-1 MI0018888 - chr2 21612993 21613079 - -
aca-mir-9-2 MI0018889 - GL343444.1 370592 370678 + -
aca-mir-9-3 MI0018890 - None None -
ola-mir-9a-2 MI0019421 - 3 20705983 20706084 - -
ola-mir-9b-1 MI0019427 - 4 2428407 2428513 - -
ola-mir-9a-3 MI0019433 - 6 17135424 17135527 + -
ola-mir-9a-4 MI0019469 - 9 14619699 14619802 - -
ola-mir-9a-1 MI0019515 - 16 23834590 23834697 + -
ola-mir-9b-2 MI0019522 - 17 23411155 23411254 - -
ola-mir-9a-5 MI0019557 - scaffold7831 774 875 + -
sha-mir-9 MI0019609 - GL841279.1 926517 926666 + -
tca-mir-9e MI0020231 - ChLG9 11062 11172 - -
cgr-mir-9 MI0020559 37 JH000258.1 941049 941128 + Low
hme-mir-79 MI0021784 - HE669612 9681 9765 - -
hme-mir-9b MI0021799 - HE670875 766546 766650 + -
hme-mir-9a MI0021800 - HE669612 10280 10390 - -
ssc-mir-9-3 MI0022123 127 chr7 59924193 59924273 + -
tur-mir-9-1 MI0019388 - None None -
tur-mir-9-2 MI0019390 - None None -
hco-mir-79 MI0020002 - None None -
hco-mir-9 MI0020023 - None None -
mse-mir-79 MI0021021 - JH668930.1 82368 82471 - -
mse-mir-9a MI0021022 - JH668930.1 82977 83078 - -
mse-mir-9b MI0021026 - JH668478.1 236456 236557 - -
pol-mir-9b MI0022193 - None None -
ccr-mir-9 MI0023418 - None None -
mdo-mir-9a-3 MI0023762 25238 chr2 191328853 191328914 - High
mdo-mir-9b MI0023797 11 chr3 452650307 452650365 - -
ipu-mir-9-4 MI0024657 - None None -
ipu-mir-9-2 MI0024658 - None None -
ipu-mir-9-6 MI0024659 - None None -
ipu-mir-9-1 MI0024660 - None None -
ipu-mir-9-3 MI0024661 - None None -
ipu-mir-9-7 MI0024662 - None None -
ipu-mir-9-5 MI0024663 - None None -
cbn-mir-79-1 MI0024927 - Cbre_Contig15 169202 169268 - -
cbn-mir-79-2 MI0024928 - Cbre_Contig648 22277 22343 + -
prd-mir-9b MI0025609 - KB455447.1 99728 99790 - -
bbe-mir-9 MI0026277 - None None -
pmi-mir-9 MI0025088 - None None -
lva-mir-9 MI0025137 - None None -
ssa-mir-9a-1 MI0026769 - None None -
ssa-mir-9a-2 MI0026770 - None None -
ssa-mir-9a-3 MI0026771 - None None -
ssa-mir-9a-4 MI0026772 - None None -
ssa-mir-9a-5 MI0026773 - None None -
ssa-mir-9a-6 MI0026774 - None None -
ssa-mir-9a-7 MI0026775 - None None -
ssa-mir-9a-8 MI0026776 - None None -
ssa-mir-9b MI0026777 - None None -
pxy-mir-9a MI0027371 5834 scaffold_42 491913 492006 - -
pxy-mir-9b-1 MI0027403 4247 scaffold_287 26021 26126 - High
pxy-mir-9b-2 MI0027404 4247 scaffold_32 1410282 1410387 + High
efu-mir-9-2 MI0028623 - JH977860.1 169282 169363 - -
efu-mir-9-3 MI0028818 - JH977616.1 31454199 31454278 - -
efu-mir-9-1 MI0028894 - JH977735.1 626278 626359 + -
chi-mir-9 MI0030842 - chr21 20827391 20827467 + -
tch-mir-9-1 MI0031182 - KB365954.1 2762565 2762623 - -
tch-mir-9-2 MI0031238 - KB320802.1 936542 936602 + -
tch-mir-9-3 MI0031250 - KB320890.1 825879 825939 - -
oha-mir-9-1 MI0031487 - AZIM01001989.1 73489 73583 + -
oha-mir-9-2 MI0031488 - AZIM01000360.1 98944 99023 - -
oha-mir-9-3 MI0031489 - AZIM01005650.1 31860 31944 - -
oha-mir-9-4 MI0031490 - AZIM01000861.1 231982 232060 + -



Comments or questions? Email mirbase@manchester.ac.uk