Stem-loop cfa-mir-9-3

Accession

MI0008086

Description

Canis lupus familiaris cfa-mir-9-3 precursor miRNA

Sequence

4774923 reads, 9488.0 reads per million, 82 experiments

UCUUUGGUUAUCUAGCUGUAUGAgugccacagagccgucAUAAAGCUAGAUAACCGAAAGU
..(((((((((((((((.(((((..((......))..))))).)))))))))))))))...

Structure

-UC               G     gu  ca 
   UUUGGUUAUCUAGCU UAUGA  gc  c
   ||||||||||||||| |||||  ||   
   AAGCCAAUAGAUCGA AUAcu  cg  a
UGA               A     gc  ag 

Annotation confidence High

Genome context

3: 52827742-52827802 [+]

Mature cfa-miR-9-5p

• Accession: MIMAT0006674
• Description: Canis lupus familiaris cfa-miR-9-5p mature miRNA
• Sequence: 1 - UCUUUGGUUAUCUAGCUGUAUGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-9-3p

• Accession: MIMAT0051794
• Description: Canis lupus familiaris cfa-miR-9-3p mature miRNA
• Sequence: 40 - AUAAAGCUAGAUAACCGAAAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415