Stem-loop ola-mir-9a-5

Accession

MI0019557

Description

Oryzias latipes ola-mir-9a-5 precursor miRNA

Literature search

4 open access papers mention ola-mir-9a-5
(15 sentences)

Sequence

1456358 reads, 7771.0 reads per million, 49 experiments

cgccugagggguugucuguuaUCUUUGGUUAUCUAGCUGUAUGagugccguauuuucuucAUAAAGCUAGAUAACCGAAAGUaacaagaaucccauuacaug
.......((((((.(.((((((.(((((((((((((((.((((((............)))))).))))))))))))))).))))))).))))))........

Structure

-cgccuga      g c      C               G      ugccg 
        gggguu u uguuaU UUUGGUUAUCUAGCU UAUGag     u
        |||||| | |||||| ||||||||||||||| ||||||      
        cccuaa a acaaUG AAGCCAAUAGAUCGA AUAcuu     a
guacauua      g -      A               A      cuuuu 

Annotation confidence High

Genome context

scaffold7831: 774-875 [+]

Mature ola-miR-9a-5p

• Accession: MIMAT0022636
• Description: Oryzias latipes ola-miR-9a-5p mature miRNA
• Sequence: 22 - UCUUUGGUUAUCUAGCUGUAUG - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9a-3p

• Accession: MIMAT0022537
• Description: Oryzias latipes ola-miR-9a-3p mature miRNA
• Sequence: 61 - AUAAAGCUAGAUAACCGAAAGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8