miRBase entry: cqu-mir-9

Stem-loop cqu-mir-9


Accession
MI0013581
Description
Culex quinquefasciatus cqu-mir-9 precursor miRNA
Gene family
MIPF0000014; mir-9


Sequence

augcguauaauuuccggcugaaUCUUUGGUAUUCUAGCUGUAGAauguugagcuuguuacgguaucuucUAAAGCUUUAGUACCAGAGGUCcaacugggaauugcuugcug
..(((..((((((((((.((.((((((((((((..((((.(((((.((...(((......))))).))))).))))..)))))))))))).)).))))))))))..)))..

Structure
au   ua          c  a            CU    G     u  uga   ug 
  gcg  uaauuuccgg ug aUCUUUGGUAUU  AGCU UAGAa gu   gcu  u
  |||  |||||||||| || ||||||||||||  |||| ||||| ||   |||   
  cgu  guuaaggguc ac UGGAGACCAUGA  UCGA AUcuu ua   ugg  u
gu   uc          a  C            UU    A     c  ---   ca 


Annotation confidence Not enough data
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Genome context
supercont3.83: 64711-64821 [+]

Database links

Mature cqu-miR-9-5p

Accession MIMAT0014380
Description Culex quinquefasciatus cqu-miR-9-5p mature miRNA
Sequence 23 - UCUUUGGUAUUCUAGCUGUAGA - 44
Evidence experimental
Illumina [1]

Mature cqu-miR-9-3p

Accession MIMAT0014381
Description Culex quinquefasciatus cqu-miR-9-3p mature miRNA
Sequence 70 - UAAAGCUUUAGUACCAGAGGUC - 91
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20167119
    Identification of microRNAs expressed in two mosquito vectors, Aedes albopictus and Culex quinquefasciatus
    Skalsky RL, Vanlandingham DL, Scholle F, Higgs S, Cullen BR
    BMC Genomics (2010) 11:119