Stem-loop cfa-mir-9-1

Accession

MI0008125

Description

Canis lupus familiaris cfa-mir-9-1 precursor miRNA

Literature search

1 open access papers mention cfa-mir-9-1
(4 sentences)

Sequence

4874275 reads, 9546.0 reads per million, 82 experiments

UCUUUGGUUAUCUAGCUGUAUGAgugguguggagucuucAUAAAGCUAGAUAACCGAAAGUa
..(((((((((((((((.((((((.(.(....).).)))))).)))))))))))))))....

Structure

--UC               G      u g g 
    UUUGGUUAUCUAGCU UAUGAg g u u
    ||||||||||||||| |||||| | |  
    AAGCCAAUAGAUCGA AUAcuu u a g
aUGA               A      c g g 

Annotation confidence High

Genome context

7: 41374385-41374446 [+]

Mature cfa-miR-9-5p

• Accession: MIMAT0006674
• Description: Canis lupus familiaris cfa-miR-9-5p mature miRNA
• Sequence: 1 - UCUUUGGUUAUCUAGCUGUAUGA - 23
• Evidence: experimental ; Illumina [1]

Mature cfa-miR-9-3p

• Accession: MIMAT0051794
• Description: Canis lupus familiaris cfa-miR-9-3p mature miRNA
• Sequence: 40 - AUAAAGCUAGAUAACCGAAAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 18392026
   Discovering microRNAs from deep sequencing data using miRDeep
   "Friedlander MR, Chen W, Adamidi C, Maaskola J, Einspanier R, Knespel S, Rajewsky N"
   "Nat Biotechnol (2008) 26:407-415