Stem-loop ola-mir-9a-4

Accession

MI0019469

Description

Oryzias latipes ola-mir-9a-4 precursor miRNA

Literature search

4 open access papers mention ola-mir-9a-4
(15 sentences)

Sequence

1457629 reads, 7912.0 reads per million, 49 experiments

gaaauuugggaaguggguuguuaUCUUUGGUUAUCUAGCUGUAUGaguguucugcucgucAUAAAGCUAGAUAACCGAAAGUaaaaacuacuuccagacucuuc
........((((((((....((((.(((((((((((((((..((((((.....)))))).....))))))))))))))).))))...)))))))).........

Structure

-gaaauuug        guug    C               ---GU      g 
         ggaagugg    uuaU UUUGGUUAUCUAGCU     AUGagu u
         ||||||||    |||| |||||||||||||||     |||||| u
         ccuucauc    aaUG AAGCCAAUAGAUCGA     ugcucg c
cuucucaga        -aaa    A               AAUAc      u 

Annotation confidence High

Genome context

9: 14619699-14619802 [-]

Mature ola-miR-9a-5p

• Accession: MIMAT0022636
• Description: Oryzias latipes ola-miR-9a-5p mature miRNA
• Sequence: 24 - UCUUUGGUUAUCUAGCUGUAUG - 45
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9a-3p

• Accession: MIMAT0022537
• Description: Oryzias latipes ola-miR-9a-3p mature miRNA
• Sequence: 61 - AUAAAGCUAGAUAACCGAAAGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8