Stem-loop ola-mir-9b-1

Accession

MI0019427

Description

Oryzias latipes ola-mir-9b-1 precursor miRNA

Literature search

4 open access papers mention ola-mir-9b-1
(14 sentences)

Sequence

1349886 reads, 9117.0 reads per million, 49 experiments

uuuaagaaacguggcuuaguuuuuaUCUUUGGUUAUCUAGCUGUAUGaguugguguaauaucaUAAAGCUAGAGAACCGAAUGUAgaaacugauuccgcugccagca
..........((((.(((((((((((.(((((((.(((((((.(((((..(......)..))))).))))))).))))))).)))))))))))..))))........

Structure

uuuaagaaac    -c           C       A       G     gu gg 
          gugg  uuaguuuuuaU UUUGGUU UCUAGCU UAUGa  u  u
          ||||  ||||||||||| ||||||| ||||||| |||||  |   
          cgcc  agucaaagAUG AAGCCAA AGAUCGA AUacu  a  g
--acgaccgu    uu           U       G       A     au au 

Annotation confidence High

Genome context

4: 2428407-2428513 [-]

Mature ola-miR-9b-5p

• Accession: MIMAT0022546
• Description: Oryzias latipes ola-miR-9b-5p mature miRNA
• Sequence: 26 - UCUUUGGUUAUCUAGCUGUAUG - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9b-1-3p

• Accession: MIMAT0057080
• Description: Oryzias latipes ola-miR-9b-1-3p mature miRNA
• Sequence: 64 - UAAAGCUAGAGAACCGAAUGUA - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8