Stem-loop fru-mir-9-1

Accession

MI0003225

Description

Fugu rubripes fru-mir-9-1 precursor miRNA

Sequence

10036186 reads, 89912.0 reads per million, 12 experiments

gggguugucuguuaUCUUUGGUUAUCUAGCUGUAUGAgugacguacaaucuucaUAAAGCUAGAUAACCGAAAGUAAcaagaauccc
((((((.(.((((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))))).))))))

Structure

      g c      C               G      u  cg 
gggguu u uguuaU UUUGGUUAUCUAGCU UAUGAg ga  u
|||||| | |||||| ||||||||||||||| |||||| ||  a
cccuaa a acAAUG AAGCCAAUAGAUCGA AUacuu cu  c
      g -      A               A      -  aa 

Annotation confidence High

Comments

This Fugu miRNA sequence is predicted based on homology with a verified zebrafish sequence (Mihaela Zavolan, personal communication).

Genome context

ref|NC_042296.1|: 11798822-11798908 [+]

Mature fru-miR-9-5p

• Accession: MIMAT0002910
• Description: Fugu rubripes fru-miR-9-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: not_experimental

Mature fru-miR-9-3p

• Accession: MIMAT0052818
• Description: Fugu rubripes fru-miR-9-3p mature miRNA
• Sequence: 55 - UAAAGCUAGAUAACCGAAAGUAA - 77
• Evidence: not_experimental

References