Stem-loop ola-mir-9a-1

Accession

MI0019515

Description

Oryzias latipes ola-mir-9a-1 precursor miRNA

Literature search

4 open access papers mention ola-mir-9a-1
(15 sentences)

Sequence

1456280 reads, 7768.0 reads per million, 49 experiments

gggaagccuucgggguugauuguuaUCUUUGGUUAUCUAGCUGUAUGagugauguacauucuucAUAAAGCUAGAUAACCGAAAGUaacaagaaucccauuacacucc
((....))...((((((..(((((((.(((((((((((((((.((((((.((.......)))))))).))))))))))))))).))))))).))))))..........

Structure

gggaagccuuc      ga       C               G      u  ug 
           gggguu  uuguuaU UUUGGUUAUCUAGCU UAUGag ga  u
           ||||||  ||||||| ||||||||||||||| |||||| ||  a
           cccuaa  aacaaUG AAGCCAAUAGAUCGA AUAcuu cu  c
-ccucacauua      -g       A               A      -  ua 

Annotation confidence High

Genome context

16: 23834590-23834697 [+]

Mature ola-miR-9a-5p

• Accession: MIMAT0022636
• Description: Oryzias latipes ola-miR-9a-5p mature miRNA
• Sequence: 26 - UCUUUGGUUAUCUAGCUGUAUG - 47
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9a-3p

• Accession: MIMAT0022537
• Description: Oryzias latipes ola-miR-9a-3p mature miRNA
• Sequence: 65 - AUAAAGCUAGAUAACCGAAAGU - 86
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8