Stem-loop xtr-mir-9a-1

Accession

MI0004793

Description

Xenopus tropicalis xtr-mir-9a-1 precursor miRNA

Literature search

1 open access papers mention xtr-mir-9a-1
(1 sentences)

Sequence

372081 reads, 24941.0 reads per million, 4 experiments

gggguugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguugucaauccuucaUAAAGCUAGAUAACCGAAAGUAaaaauaacccca
(((((((....((((.(((((((((((((((.((((((.(........).)))))).))))))))))))))).))))...))))))).

Structure

-       guug    C               G      u uug 
 gggguug    uuaU UUUGGUUAUCUAGCU UAUGAg g   u
 |||||||    |||| ||||||||||||||| |||||| |    
 ccccaau    aAUG AAGCCAAUAGAUCGA AUacuu c   c
a       -aaa    A               A      c uaa 

Annotation confidence High

Genome context

8: 132772700-132772787 [+]

Mature xtr-miR-9a-5p

• Accession: MIMAT0003553
• Description: Xenopus tropicalis xtr-miR-9a-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; Northern [1]

Mature xtr-miR-9a-3p

• Accession: MIMAT0003554
• Description: Xenopus tropicalis xtr-miR-9a-3p mature miRNA
• Sequence: 55 - UAAAGCUAGAUAACCGAAAGUA - 76
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112