Stem-loop mdo-mir-9a-1

Accession

MI0005272

Description

Monodelphis domestica mdo-mir-9a-1 precursor miRNA

Sequence

1674756 reads, 24898 reads per million, 5 experiments

cgaggcccguuucucUCUUUGGUUAUCUAGCUGUAUGAguguuauugagcuaucAUAAAGCUAGAUAACCGAAAGUagaaaugacuuuca
.((((..(((((((((.(((((((((((((((.(((((..(((....)))..))))).))))))))))))))))).)))))))..)))).

Structure

c    cc       -  C               G     gu   a 
 gagg  cguuucu cU UUUGGUUAUCUAGCU UAUGA  guu u
 ||||  ||||||| || ||||||||||||||| |||||  |||  
 cuuu  guaaaga GA AAGCCAAUAGAUCGA AUAcu  cga u
a    ca       U  -               A     au   g 

Annotation confidence Low

Genome context

chr1: 122711570-122711659 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mdo-mir-9a-1

Mature mdo-miR-9a-3p

• Accession: MIMAT0004088
• Description: Monodelphis domestica mdo-miR-9a-3p mature miRNA
• Sequence: 55 - AUAAAGCUAGAUAACCGAAAGU - 76
• Evidence: experimental ; Illumina [1]

Mature mdo-miR-9a-5p

• Accession: MIMAT0004087
• Description: Monodelphis domestica mdo-miR-9a-5p mature miRNA
• Sequence: 16 - UCUUUGGUUAUCUAGCUGUAUGA - 38
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72