Stem-loop ola-mir-9a-3

Accession

MI0019433

Description

Oryzias latipes ola-mir-9a-3 precursor miRNA

Literature search

4 open access papers mention ola-mir-9a-3
(15 sentences)

Sequence

1456808 reads, 8039.0 reads per million, 48 experiments

gaaugaaggaggucguuuuugUCUUUGGUUAUCUAGCUGUAUGaguguuaaauaccugucAUAAAGCUAGAUAACCGAAAGUagaaaugacuuuuacuauauuu
.......((((((((((((((.((((((((((((((((.(((((((((...))))...))))).)))))))))))).)))))))))))))))))).........

Structure

--gaaugaa              U    -            G     ---    u 
         ggaggucguuuuug CUUU GGUUAUCUAGCU UAUGa   gugu  
         |||||||||||||| |||| |||||||||||| |||||   |||| a
         uuuucaguaaagaU GAAA CCAAUAGAUCGA AUAcu   caua  
uuuauauca              -    G            A     guc    a 

Annotation confidence High

Genome context

6: 17135424-17135527 [+]

Mature ola-miR-9a-5p

• Accession: MIMAT0022636
• Description: Oryzias latipes ola-miR-9a-5p mature miRNA
• Sequence: 22 - UCUUUGGUUAUCUAGCUGUAUG - 43
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9a-3p

• Accession: MIMAT0022537
• Description: Oryzias latipes ola-miR-9a-3p mature miRNA
• Sequence: 61 - AUAAAGCUAGAUAACCGAAAGU - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8