Stem-loop xtr-mir-9a-2

Accession

MI0004794

Description

Xenopus tropicalis xtr-mir-9a-2 precursor miRNA

Literature search

1 open access papers mention xtr-mir-9a-2
(1 sentences)

Sequence

372080 reads, 24940.0 reads per million, 4 experiments

ggaagugguuguuaUCUUUGGUUAUCUAGCUGUAUGAguguauugguuuucaUAAAGCUAGAUAACCGAAAGUAaaaacuccuuc
.((((.((((.((((.(((((((((((((((.((((((..........)))))).))))))))))))))).)))).)))).))))

Structure

g    u    g    C               G      ugua 
 gaag gguu uuaU UUUGGUUAUCUAGCU UAUGAg    u
 |||| |||| |||| ||||||||||||||| ||||||     
 cuuc ucaa aAUG AAGCCAAUAGAUCGA AUacuu    u
-    c    a    A               A      uugg 

Annotation confidence High

Genome context

1: 179534573-179534657 [+]

Mature xtr-miR-9a-5p

• Accession: MIMAT0003553
• Description: Xenopus tropicalis xtr-miR-9a-5p mature miRNA
• Sequence: 15 - UCUUUGGUUAUCUAGCUGUAUGA - 37
• Evidence: experimental ; Northern [1]

Mature xtr-miR-9a-3p

• Accession: MIMAT0003554
• Description: Xenopus tropicalis xtr-miR-9a-3p mature miRNA
• Sequence: 53 - UAAAGCUAGAUAACCGAAAGUA - 74
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 18032731
   Xenopus microRNA genes are predominantly located within introns and are differentially expressed in adult frog tissues via post-transcriptional regulation
   "Tang GQ, Maxwell ES"
   "Genome Res (2008) 18:104-112