Stem-loop ola-mir-9a-2

Accession

MI0019421

Description

Oryzias latipes ola-mir-9a-2 precursor miRNA

Literature search

4 open access papers mention ola-mir-9a-2
(15 sentences)

Sequence

1457743 reads, 7988.0 reads per million, 49 experiments

ucaguggagccuguuccugUCUUUGGUUAUCUAGCUGUAUGagugugauuuacccaucAUAAAGCUAGAUAACCGAAAGUaggaaugaccucugacaccuca
((((.((.....(((((((.((((((((((((((((.(((((..(((...)))...))))).)))))))))))).)))))))))))..)).)))).......

Structure

-------    u  agccu       U    -            G     -gu   a 
       ucag gg     guuccug CUUU GGUUAUCUAGCU UAUGa   gug  
       |||| ||     ||||||| |||| |||||||||||| |||||   ||| u
       aguc cc     uaaggaU GAAA CCAAUAGAUCGA AUAcu   cau  
acuccac    u  ---ag       -    G            A     acc   u 

Annotation confidence High

Genome context

3: 20705983-20706084 [-]

Mature ola-miR-9a-5p

• Accession: MIMAT0022636
• Description: Oryzias latipes ola-miR-9a-5p mature miRNA
• Sequence: 20 - UCUUUGGUUAUCUAGCUGUAUG - 41
• Evidence: experimental ; SOLiD [1]

Mature ola-miR-9a-3p

• Accession: MIMAT0022537
• Description: Oryzias latipes ola-miR-9a-3p mature miRNA
• Sequence: 59 - AUAAAGCUAGAUAACCGAAAGU - 80
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 21143817
   Discovery and characterization of medaka miRNA genes by next generation sequencing platform
   Li SC, Chan WC, Ho MR, Tsai KW, Hu LY, Lai CH, Hsu CN, Hwang PP, Lin WC
   BMC Genomics (2010) 11:S8