Stem-loop sequence hsa-mir-125b-1

AccessionMI0000446 (change log)
Symbol HGNC:MIR125B1
DescriptionHomo sapiens miR-125b-1 stem-loop
Gene family MIPF0000033; mir-10
Literature search

685 open access papers mention hsa-mir-125b-1
(4114 sentences)

   u    uc   u   uc  ug   c           au     c 
5'  gcgc  cuc cag  cc  aga ccuaacuugug  guuua c
    ||||  ||| |||  ||  ||| |||||||||||  ||||| g
3'  cgug  gag guc  gg  ucu ggauugggcac  uaaau u
   u    cu   c   ga  gu   c           -c     u 
Get sequence
Deep sequencing
4588477 reads, 1.38e+04 reads per million, 159 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

This miRNA sequence is predicted based on homology to a verified miRNA from mouse [1]. Its expression was later verified in human BC-1 cells [2].

Genome context
Coordinates (GRCh38; GCA_000001405.15) Overlapping transcripts
chr11: 122099757-122099844 [-]
OTTHUMT00000387568 ; RP11-820L6.1-006; intron 2
OTTHUMT00000387569 ; RP11-820L6.1-008; intron 2
OTTHUMT00000387551 ; RP11-820L6.1-001; intron 3
ENST00000529804 ; RP11-820L6.1-006; intron 2
ENST00000529733 ; RP11-820L6.1-008; intron 2
ENST00000527474 ; RP11-820L6.1-001; intron 3
Database links

Mature sequence hsa-miR-125b-5p

Accession MIMAT0000423
Previous IDshsa-miR-125b

15 - 


 - 36

Get sequence
Deep sequencing8234367 reads, 159 experiments
Evidence experimental; cloned [2,4-6], Illumina [7]
Database links
Predicted targets

Mature sequence hsa-miR-125b-1-3p

Accession MIMAT0004592
Previous IDshsa-miR-125b-1*

55 - 


 - 76

Get sequence
Deep sequencing9343 reads, 133 experiments
Evidence experimental; cloned [5]
Database links
Predicted targets


PMID:12007417 "Identification of tissue-specific microRNAs from mouse" Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T Curr Biol. 12:735-739(2002).
PMID:15800047 "Kaposi's sarcoma-associated herpesvirus expresses an array of viral microRNAs in latently infected cells" Cai X, Lu S, Zhang Z, Gonzalez CM, Damania B, Cullen BR Proc Natl Acad Sci U S A. 102:5570-5575(2005).
PMID:15978578 "Identification of human fetal liver miRNAs by a novel method" Fu H, Tie Y, Xu C, Zhang Z, Zhu J, Shi Y, Jiang H, Sun Z, Zheng X FEBS Lett. 579:3849-3854(2005).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:17616659 "Patterns of known and novel small RNAs in human cervical cancer" Lui WO, Pourmand N, Patterson BK, Fire A Cancer Res. 67:6031-6043(2007).