miRBase entry: mmu-mir-20a

Stem-loop mmu-mir-20a


Accession
MI0000568
Symbol
MGI: Mir20a
Description
Mus musculus mmu-mir-20a precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
168 open access papers mention mmu-mir-20a
(965 sentences)

Sequence

211709 reads, 1950 reads per million, 107 experiments
gugugaugugacagcuucuguagcacUAAAGUGCUUAUAGUGCAGGUAGuguguagccaucuACUGCAUUACGAGCACUUAAAGuacugccagcuguagaacuccag
.((.((.((.((((((...((((.(((.((((((((.((((((((.(((.(((....)))))))))))))).))))))))..))).)))).))))))...)))))).

Structure
g  u  u  --g      ucu    c   -A        A        G   u   u 
 ug ga gu   acagcu   guag acU  AAGUGCUU UAGUGCAG UAG gug a
 || || ||   ||||||   |||| |||  |||||||| |||||||| ||| |||  
 ac cu ca   ugucga   cguc uGA  UUCACGAG AUUACGUC Auc uac g
g  -  -  aga      --c    a   AA        C        -   -   c 


Annotation confidence High
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Genome context
chr14: 115044157-115044263 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from mmu-mir-20a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-20a-5p

Accession MIMAT0000529
Description Mus musculus mmu-miR-20a-5p mature miRNA
Sequence 27 - UAAAGUGCUUAUAGUGCAGGUAG - 49
Evidence experimental
cloned [1-3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-20a-3p

Accession MIMAT0004627
Description Mus musculus mmu-miR-20a-3p mature miRNA
Sequence 63 - ACUGCAUUACGAGCACUUAAAG - 84
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009