Stem-loop mmu-mir-31

Accession

MI0000579

Symbol

MGI: Mir31

Description

Mus musculus mmu-mir-31 precursor miRNA

Literature search

143 open access papers mention mmu-mir-31
(1159 sentences)

Sequence

128056 reads, 383 reads per million, 102 experiments

ugcuccuguaacucggaacuggagaggAGGCAAGAUGCUGGCAUAGCUGuugaacugagaaccUGCUAUGCCAACAUAUUGCCAUCuuuccugucugacagcagcu
.(((.(((....(((((.(.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))))).))).

Structure

u   c   uaac     a u       A     G   C         -U   gaa 
 gcu cug    ucgga c ggagagg GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    ||||| | ||||||| ||||| ||| |||||||||  |||    
 cga gac    agucu g ccuuuCU CCGUU UAC ACCGUAUCG  caa   u
u   c   ----     - u       A     A   A         Uc   gag 

Annotation confidence High

Genome context

chr4: 88910557-88910662 [-]

Mature mmu-miR-31-5p

• Accession: MIMAT0000538
• Description: Mus musculus mmu-miR-31-5p mature miRNA
• Sequence: 28 - AGGCAAGAUGCUGGCAUAGCUG - 49
• Evidence: experimental ; cloned [1-2], Illumina [3-4]

Mature mmu-miR-31-3p

• Accession: MIMAT0004634
• Description: Mus musculus mmu-miR-31-3p mature miRNA
• Sequence: 64 - UGCUAUGCCAACAUAUUGCCAUC - 86
• Evidence: experimental ; cloned [2], Illumina [3-4]

References

1. PubMed ID: 17604727
   A mammalian microRNA expression atlas based on small RNA library sequencing
   "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
   "Cell (2007) 129:1401-1414


2. PubMed ID: 12919684
   Embryonic stem cell-specific MicroRNAs
   "Houbaviy HB, Murray MF, Sharp PA"
   "Dev Cell (2003) 5:351-358


3. PubMed ID: 20215419
   MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
   "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
   "Mol Hum Reprod (2010) 16:463-471


4. PubMed ID: 20413612
   Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
   "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
   "Genes Dev (2010) 24:992-1009