miRBase entry: mmu-mir-31

Stem-loop mmu-mir-31


Accession
MI0000579
Symbol
MGI: Mir31
Description
Mus musculus mmu-mir-31 precursor miRNA
Gene family
MIPF0000064; mir-31

Literature search
143 open access papers mention mmu-mir-31
(1159 sentences)

Sequence

128056 reads, 615 reads per million, 102 experiments
ugcuccuguaacucggaacuggagaggAGGCAAGAUGCUGGCAUAGCUGuugaacugagaaccUGCUAUGCCAACAUAUUGCCAUCuuuccugucugacagcagcu
.(((.(((....(((((.(.(((((((.(((((.(((.(((((((((.(((........)))..))))))))).))).))))).))))))).))))))))).))).

Structure
u   c   uaac     a u       A     G   C         -U   gaa 
 gcu cug    ucgga c ggagagg GGCAA AUG UGGCAUAGC  Guu   c
 ||| |||    ||||| | ||||||| ||||| ||| |||||||||  |||    
 cga gac    agucu g ccuuuCU CCGUU UAC ACCGUAUCG  caa   u
u   c   ----     - u       A     A   A         Uc   gag 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr4: 88910557-88910662 [-]

Database links

Mature mmu-miR-31-5p

Accession MIMAT0000538
Description Mus musculus mmu-miR-31-5p mature miRNA
Sequence 28 - AGGCAAGAUGCUGGCAUAGCUG - 49
Evidence experimental
cloned [1-2], Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-31-3p

Accession MIMAT0004634
Description Mus musculus mmu-miR-31-3p mature miRNA
Sequence 64 - UGCUAUGCCAACAUAUUGCCAUC - 86
Evidence experimental
cloned [2], Illumina [3-4]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12919684
    Embryonic stem cell-specific MicroRNAs
    "Houbaviy HB, Murray MF, Sharp PA"
    "Dev Cell (2003) 5:351-358

  3. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  4. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009