Stem-loop sequence mmu-mir-219a-1

Accession

MI0000702 (change log)

Symbol

MGI:Mir219a-1

Description

Mus musculus miR-219a-1 stem-loop

Gene family

MIPF0000044; mir-219

Literature search

47 open access papers mention mmu-mir-219a-1
(456 sentences)

Stem-loop

   ---------ccguccc    c       cu   u     a            a   ucu 
5'                 gggc gcggcuc  gau gucca acgcaauucucg guc   g
                   |||| |||||||  ||| ||||| |||||||||||| |||   g
3'                 cccg cgccgag  cug caggu ugcguugagagc cgg   c
   gggggagcuccaaacc    c       cc   -     c            -   ccu 

Deep sequencing

37090 reads, 150 reads per million, 101 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr17: 34024983-34025092 [-]
• Overlapping transcripts:

  sense

  OTTMUST00000095531 ; Mir219-1-001; exon 1

  ENSMUST00000174851 ; Gm26940-001; exon 1

Clustered miRNAs

< 10kb from mmu-mir-219a-1

• mmu-mir-219c: chr17: 34025012-34025071 [+]
• mmu-mir-219a-1: chr17: 34024983-34025092 [-]

Database links

• EntrezGene:Mirn219-1
• MGI:Mir219a-1
• RNAcentral:URS000075E24C_10090
• miRBase Tracker:MI0000702

Mature sequence mmu-miR-219a-5p

• Accession: MIMAT0000664
• Previous IDs: mmu-miR-219
• Sequence: 21 - ugauuguccaaacgcaauucu - 41
• Deep sequencing: 56690 reads, 91 experiments
• Evidence: experimental; Illumina [3-4]
• Database links:
  • RNAcentral:URS0000565C8D_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-219a-5p
  • miRDB:mmu-miR-219a-5p
  • microrna.org:mmu-miR-219a-5p

Mature sequence mmu-miR-219a-1-3p

• Accession: MIMAT0017055
• Previous IDs: mmu-miR-219-3p*
• Sequence: 62 - agaguugcgucuggacgucccg - 83
• Deep sequencing: 8711 reads, 86 experiments
• Evidence: experimental; Illumina [5]
• Database links:
  • RNAcentral:URS00004980B0_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-219a-1-3p
  • miRDB:mmu-miR-219a-1-3p

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15634332 "New human and mouse microRNA genes found by homology search" Weber MJ FEBS J. 272:59-73(2005).
3. PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
4. PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
5. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).