Stem-loop sequence mmu-mir-199a-2

AccessionMI0000713 (change log)
Symbol MGI:Mir199a-2
DescriptionMus musculus miR-199a-2 stem-loop
Gene family MIPF0000040; mir-199
Literature search

164 open access papers mention mmu-mir-199a-2
(1263 sentences)

   uggaa   uca  aga    -    c   gcc       u        c   --uca  ac 
5'      gcu   gg   uccu gcuc guc   ccagugu cagacuac ugu     gg  a
        |||   ||   |||| |||| |||   ||||||| |||||||| |||     ||   
3'      cga   cc   ggga cggg cag   gguuaca gucugaug aca     cc  a
   ----a   ---  ---    a    u   auu       c        -   uguug  gu 
Get sequence
Deep sequencing
4162897 reads, 1.64e+04 reads per million, 110 experiments
Confidence Annotation confidence: high
Feedback: Do you believe this miRNA is real?

The mature sequence shown here represents the most commonly cloned form from large-scale cloning studies [5]. The 5' end of the miRNA may be offset with respect to previous annotations.

Genome context
Coordinates (GRCm38; GCA_000001635.2) Overlapping transcripts
chr1: 162217814-162217923 [+]
OTTMUST00000073023 ; Dnm3os-001; exon 1
ENSMUST00000139662 ; Dnm3os-001; exon 1
ENSMUST00000178978 ; Dnm3os-201; exon 1
OTTMUST00000073178 ; Dnm3-003; intron 3
OTTMUST00000073179 ; Dnm3-004; intron 3
OTTMUST00000073026 ; Dnm3-006; intron 14
OTTMUST00000073176 ; Dnm3-001; intron 14
ENSMUST00000160665 ; Dnm3-004; intron 3
ENSMUST00000159763 ; Dnm3-003; intron 3
ENSMUST00000070330 ; Dnm3-006; intron 14
ENSMUST00000086074 ; Dnm3-001; intron 14
Clustered miRNAs
< 10kb from mmu-mir-199a-2
mmu-mir-199a-2chr1: 162217814-162217923 [+]
mmu-mir-214chr1: 162223368-162223477 [+]
Database links

Mature sequence mmu-miR-199a-5p

Accession MIMAT0000229
Previous IDsmmu-miR-199a

31 - 


 - 53

Get sequence
Deep sequencing1057387 reads, 91 experiments
Evidence experimental; cloned [5], Illumina [6-7]
Database links
Predicted targets

Mature sequence mmu-miR-199a-3p

Accession MIMAT0000230
Previous IDsmmu-miR-199a*

70 - 


 - 91

Get sequence
Deep sequencing7264843 reads, 106 experiments
Evidence experimental; cloned [1,5], Illumina [6-7]
Database links
Predicted targets


PMID:12554859 "New microRNAs from mouse and human" Lagos-Quintana M, Rauhut R, Meyer J, Borkhardt A, Tuschl T RNA. 9:175-179(2003).
PMID:12919684 "Embryonic stem cell-specific MicroRNAs" Houbaviy HB, Murray MF, Sharp PA Dev Cell. 5:351-358(2003).
PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
PMID:17604727 "A mammalian microRNA expression atlas based on small RNA library sequencing" Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M Cell. 129:1401-1414(2007).
PMID:20215419 "MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing" Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A Mol Hum Reprod. 16:463-471(2010).
PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).