miRBase entry: mmu-mir-219a-2

Stem-loop mmu-mir-219a-2


Accession
MI0000741
Symbol
MGI: Mir219a-2
Description
Mus musculus mmu-mir-219a-2 precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
47 open access papers mention mmu-mir-219a-2
(493 sentences)

Sequence

204501 reads, 997 reads per million, 97 experiments
acucaggggcuucgccacUGAUUGUCCAAACGCAAUUCUuguacgagucugcggccaaccgAGAAUUGUGGCUGGACAUCUGUgguugagcuccggg
.(((.(((((((.(((((.(((.(((((..(((((((((((...(.(((...))))...)))))))))))..)))))))).))))).))))))))))

Structure
a   a       c     U   U     AA           uac a   u 
 cuc ggggcuu gccac GAU GUCCA  CGCAAUUCUug   g guc  
 ||| ||||||| ||||| ||| |||||  |||||||||||   | ||| g
 ggg ccucgag uggUG CUA CAGGU  GUGUUAAGAgc   c cgg  
-   -       u     U   -     CG           caa -   c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr2: 29845631-29845727 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-219a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-219a-5p

Accession MIMAT0000664
Description Mus musculus mmu-miR-219a-5p mature miRNA
Sequence 19 - UGAUUGUCCAAACGCAAUUCU - 39
Evidence experimental
Illumina [3-4]
Database links
Predicted targets

Mature mmu-miR-219a-2-3p

Accession MIMAT0022841
Description Mus musculus mmu-miR-219a-2-3p mature miRNA
Sequence 62 - AGAAUUGUGGCUGGACAUCUGU - 83
Evidence experimental
Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  3. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009

  4. PubMed ID: 15634332
    New human and mouse microRNA genes found by homology search
    "Weber MJ"
    "FEBS J (2005) 272:59-73