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miRBase |
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Stem-loop sequence ath-MIR169b |
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Accession | MI0000976 (change log) | ||||
Description | Arabidopsis thaliana miR169b stem-loop | ||||
Gene family | MIPF0000037; MIR169_2 | ||||
Literature search |
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34 open access papers mention ath-MIR169b | ||||
Stem-loop |
c u aa agu u u c - ug cgu aac g a gu 5' cccaa ggag ag uugcauga ggag agagua aaug agcc aagga acuugccggaa uguu cau cauauga uaau g ||||| |||| || |||||||| |||| |||||| |||| |||| ||||| ||||||||||| |||| ||| ||||||| |||| 3' ggguu ccuu uc aacguacu cuuc ucucgu uuac ucgg uuccu ugaacggucuu acaa gua guguauu auua a - - -a cuu - u a c gu uau --- - a gu |
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Confidence |
Annotation confidence: not enough data
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Comments |
This sequence is a predicted paralogue of the previously identified miR169 family [1]. It is predicted to target mRNAs coding for the CCAAT Binding Factor (CBF) and HAP2-like transcription factors. |
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Genome context |
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Database links |
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Mature sequence ath-miR169b-3p |
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Accession | MIMAT0031897 |
Sequence |
124 - ggcaaguuguccuucggcuaca - 145 |
Evidence | not experimental |
References |
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1 |
PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA"
Mol Cell. 14:787-799(2004).
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2 |
PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
Genome Biol. 5:R65(2004).
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3 |
PMID:16040653
"Expression of Arabidopsis MIRNA genes"
Plant Physiol. 138:2145-2154(2005).
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4 |
PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant"
Genome Res. 16:1276-1288(2006).
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5 |
PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"
Genes Dev. 20:3407-3425(2006).
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6 |
PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis"
J Exp Bot. 61:165-177(2010).
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