miRBase entry: gga-mir-17

Stem-loop gga-mir-17


Accession
MI0001184
Description
Gallus gallus gga-mir-17 precursor miRNA
Gene family
MIPF0000001; mir-17

Literature search
19 open access papers mention gga-mir-17
(109 sentences)

Sequence

58878 reads, 961 reads per million, 5 experiments
gucagaguaauguCAAAGUGCUUACAGUGCAGGUAGUgauauauagaaccuACUGCAGUGAAGGCACUUGUagcauuauguugac
(((((.(((((((..((((((((.((.(((((...((..........))...))))).)).))))))))...))))))).)))))

Structure
     a       -CA        A  G     GUA  gaua 
gucag guaaugu   AAGUGCUU CA UGCAG   GU    u
||||| |||||||   |||||||| || |||||   ||     
caguu uauuacg   UUCACGGA GU ACGUC   ca    a
     g       aUG        A  G     Auc  agau 


Annotation confidence High
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Genome context
chr1: 148023974-148024058 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from gga-mir-17
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-17-5p

Accession MIMAT0001114
Description Gallus gallus gga-miR-17-5p mature miRNA
Sequence 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
Evidence experimental
cloned [2]
Database links
Predicted targets

Mature gga-miR-17-3p

Accession MIMAT0001115
Description Gallus gallus gga-miR-17-3p mature miRNA
Sequence 52 - ACUGCAGUGAAGGCACUUGU - 71
Evidence not_experimental
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None: