Stem-loop sequence gga-mir-106

Accession

MI0001210 (change log)

Description

Gallus gallus miR-106 stem-loop

Gene family

MIPF0000001; mir-17

Literature search

5 open access papers mention gga-mir-106
(8 sentences)

Stem-loop

     u  a  ug   -aa         c g     g   -a    
5' cc ug gu  ugc   aagugcuua a ugcag uag  gcu 
   || || ||  |||   ||||||||| | ||||| |||  || c
3' gg gc ca  acg   uucacgaau u acguc auc  cga 
     u  -  gu   guc         a g     -   ca    

Deep sequencing

69173 reads, 980 reads per million, 5 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Gallus_gallus-5.0; GCA_000002315.3): chr4: 3995151-3995231 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from gga-mir-106

• gga-mir-106: chr4: 3995151-3995231 [-]
• gga-mir-18b: chr4: 3995020-3995103 [-]
• gga-mir-20b: chr4: 3994839-3994923 [-]
• gga-mir-19b-2: chr4: 3994707-3994789 [-]
• gga-mir-92-2: chr4: 3994560-3994640 [-]
• gga-mir-363: chr4: 3994409-3994515 [-]

Database links

• EntrezGene:
• RNAcentral:URS000075B991_9031
• miRBase Tracker:MI0001210

Mature sequence gga-miR-106-5p

• Accession: MIMAT0001142
• Sequence: 14 - aaaagugcuuacagugcaggua - 35
• Deep sequencing: 68720 reads, 5 experiments
• Evidence: experimental; cloned [2], Illumina [3]
• Database links:
  • RNAcentral:URS000075D94C_9031
• Predicted targets:
  • TargetScanVert:gga-miR-106-5p
  • miRDB:gga-miR-106-5p

Mature sequence gga-miR-106-3p

• Accession: MIMAT0026517
• Sequence: 49 - acugcaguauaagcacuucugg - 70
• Deep sequencing: 450 reads, 5 experiments
• Evidence: experimental; Illumina [3]
• Predicted targets:
  • TargetScanVert:gga-miR-106-3p
  • miRDB:gga-miR-106-3p

References

1. PMID:15592404 "Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution" International Chicken Genome Sequencing Consortium Nature. 432:695-716(2004).
2. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
3. " McBride D, Carre W, Law A, Clinton M Unpublished.
4. PMID:18256158 "MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs" Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V J Virol. 82:4007-4015(2008).
5. PMID:23034410 "Birth and expression evolution of mammalian microRNA genes" Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H Genome Res. 23:34-45(2013).