miRBase entry: gga-mir-30c-1

Stem-loop gga-mir-30c-1


Accession
MI0001257
Description
Gallus gallus gga-mir-30c-1 precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
21 open access papers mention gga-mir-30c-1
(66 sentences)

Sequence

158438 reads, 2036 reads per million, 5 experiments
accaugcuguagcacgUGUAAACAUCCUACACUCUCAGCUgugaacucgagguggcUGGGAGAGGAUUGUUUACGCCuucugccaugga
.(((((..((((...(((((((((((((...(((((((((....(((...)))))))))))))))).)))))))))...))))))))).

Structure
a     cu    cac         -    ACA         guga   c 
 ccaug  guag   gUGUAAACA UCCU   CUCUCAGCU    acu  
 |||||  ||||   ||||||||| ||||   |||||||||    ||| g
 gguac  cguc   CGCAUUUGU AGGA   GAGGGUcgg    ugg  
a     --    uuC         U    ---         ----   a 


Annotation confidence High
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Genome context
chr23: 4947355-4947443 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-30c-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-30c-5p

Accession MIMAT0001137
Description Gallus gallus gga-miR-30c-5p mature miRNA
Sequence 17 - UGUAAACAUCCUACACUCUCAGCU - 40
Evidence experimental
cloned [2-3], Northern [2], Illumina [4]
Database links
Predicted targets

Mature gga-miR-30c-1-3p

Accession MIMAT0031105
Description Gallus gallus gga-miR-30c-1-3p mature miRNA
Sequence 57 - UGGGAGAGGAUUGUUUACGCC - 77
Evidence experimental
Illumina [4]
Database links
Predicted targets

References

  1. PubMed ID: 15592404
    Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
    "International Chicken Genome Sequencing Consortium"
    "Nature (2004) 432:695-716

  2. PubMed ID: 18256158
    MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
    "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
    "J Virol (2008) 82:4007-4015


  3. "McBride D, Carre W, Law A, Clinton M"
    (None) None:

  4. PubMed ID: 16750530
    Identification of microRNAs from different tissues of chicken embryo and adult chicken
    "Xu H, Wang X, Du Z, Li N"
    "FEBS Lett (2006) 580:3610-3616

  5. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45