Stem-loop sequence dre-mir-34a

AccessionMI0001365 (change log)
Previous IDsdre-mir-34a;dre-mir-34
DescriptionDanio rerio miR-34 stem-loop
Gene family MIPF0000039; mir-34
Literature search

15 open access papers mention dre-mir-34a
(87 sentences)

Stem-loop 
   cugcu    gu    -  c         -   a          g   gga 
5'      guga  gguu cu uggcagugu cuu gcugguuguu ugu   g
        ||||  |||| || ||||||||| ||| |||||||||| |||   u
3'      cacu  ucaa ga gccgucaua gaa cgacuaacga gca   g
   --uuc    gc    a  c         u   -          a   aga
Get sequence
Deep sequencing
4194 reads, 100 reads per million, 11 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr23: 22591058-22591155 [+]
sense
OTTDART00000042060 ; si:ch211-28e16.4-001; exon 4
ENSDART00000146709 ; si:ch211-28e16.4-001; exon 4
antisense
OTTDART00000042065 ; si:ch211-28e16.5-001; exon 3
ENSDART00000146966 ; si:ch211-28e16.5-001; exon 3
KZ115683.1: 215231-215328 [+]
sense
OTTDART00000042060 ; si:ch211-28e16.4-001; exon 4
ENSDART00000146709 ; si:ch211-28e16.4-001; exon 4
antisense
OTTDART00000042065 ; si:ch211-28e16.5-001; exon 3
ENSDART00000146966 ; si:ch211-28e16.5-001; exon 3
Database links

Mature sequence dre-miR-34a

Accession MIMAT0001269
Previous IDsdre-miR-34a;dre-miR-34
Sequence

19 -  

uggcagugucuuagcugguugu

 - 40

Get sequence
Deep sequencing4019 reads, 11 experiments
Evidence experimental; cloned [1-2]
Database links
Predicted targets

References

1
PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).