Stem-loop gga-mir-20b

Accession

MI0001517

Description

Gallus gallus gga-mir-20b precursor miRNA

Gene family

MIPF0000001; mir-17

Literature search

8 open access papers mention gga-mir-20b
(41 sentences)

Sequence

16405 reads, 396 reads per million, 5 experiments

cuagcaguauCAAAGUGCUCAUAGUGCAGGUAGcuuggcauuggaccuACUGUAAUGUGGGCACUUACAGuacuguuagauaaag
((((((((((..(((((((((((.(((((.(((.((.......)).)))))))).)))))))))))...))))))))))......

Structure

------          -CA           G     G   c  gg 
      cuagcaguau   AAGUGCUCAUA UGCAG UAG uu  c
      ||||||||||   ||||||||||| ||||| ||| ||  a
      gauugucauG   UUCACGGGUGU AUGUC Auc ag  u
gaaaua          ACA           A     -   c  gu 

Annotation confidence High

Genome context

chr4: 3994839-3994923 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from gga-mir-20b

Mature gga-miR-20b-5p

• Accession: MIMAT0001411
• Description: Gallus gallus gga-miR-20b-5p mature miRNA
• Sequence: 11 - CAAAGUGCUCAUAGUGCAGGUAG - 33
• Evidence: experimental ; cloned [2], Illumina [3]

Mature gga-miR-20b-3p

• Accession: MIMAT0026551
• Description: Gallus gallus gga-miR-20b-3p mature miRNA
• Sequence: 49 - ACUGUAAUGUGGGCACUUACAG - 70
• Evidence: experimental ; Illumina [3]

References

1. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


2. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


3. PubMed ID: 15590942
   Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags
   "Hubbard SJ, Grafham DV, Beattie KJ, Overton IM, McLaren SR, Croning MD, Boardman PE, Bonfield JK, Burnside J, Davies RM, Farrell ER, Francis MD, Griffiths-Jones S, Humphray SJ, Hyland C, Scott CE, Tang H, Taylor RG, Tickle C, Brown WR, Birney E, Rogers J,"
   "Genome Res (2005) 15:174-183


4. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45