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miRBase |
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Stem-loop sequence gga-mir-20b |
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Accession | MI0001517 (change log) | |||||||||||||
Description | Gallus gallus miR-20b stem-loop | |||||||||||||
Gene family | MIPF0000001; mir-17 | |||||||||||||
Literature search |
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8 open access papers mention gga-mir-20b | |||||||||||||
Stem-loop |
------ -ca g g c gg 5' cuagcaguau aagugcucaua ugcag uag uu c |||||||||| ||||||||||| ||||| ||| || a 3' gauugucaug uucacgggugu auguc auc ag u gaaaua aca a - c gu |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence gga-miR-20b-5p |
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Accession | MIMAT0001411 |
Sequence |
11 - caaagugcucauagugcagguag - 33 |
Deep sequencing | 20904 reads, 5 experiments |
Evidence | experimental; cloned [2], Illumina [3] |
Predicted targets |
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Mature sequence gga-miR-20b-3p |
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Accession | MIMAT0026551 |
Sequence |
49 - acuguaaugugggcacuuacag - 70 |
Deep sequencing | 43 reads, 5 experiments |
Evidence | experimental; Illumina [3] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:15590942
"Transcriptome analysis for the chicken based on 19,626 finished cDNA sequences and 485,337 expressed sequence tags"
Genome Res. 15:174-183(2005).
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2 |
PMID:18256158
"MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
J Virol. 82:4007-4015(2008).
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3 |
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Unpublished.
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4 |
PMID:18256158
"MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs"
J Virol. 82:4007-4015(2008).
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5 |
PMID:23034410
"Birth and expression evolution of mammalian microRNA genes"
Genome Res. 23:34-45(2013).
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