miRBase entry: gma-MIR159a

Stem-loop gma-MIR159a


Accession
MI0001773
Description
Glycine max gma-MIR159a precursor miRNA
Gene family
MIPF0000010; MIR159

Literature search
25 open access papers mention gma-MIR159a
(94 sentences)

Sequence

aauuaaaggggauuaugaagugGAGCUCCUUGAAGUCCAAUUGaggaucuuacugggugaauugagcugcuuagcuauggaucccacaguucuacccaucaauaagugcuuuugugguagucuuguggcuuccauaucuggggagcuucauuugccuuuauaguauuaaccuucUUUGGAUUGAAGGGAGCUCUAcacccuucucuucuuuucu
....((((((((.......((((((((((((..(((((((..((((....((((((((((((.(((((.(((((.((((((..((((((..(((((((..............)).)))))..))))))..)))))).))))).))))).))))))))....))))....))))..)))))))..)))))))))))).......))))))))...

Structure
aauu        uuaugaa            GA       UU    aucu    ----        u     g     c      uc      uu     -  ucaaua 
    aaagggga       gugGAGCUCCUU  AGUCCAA  Gagg    uacu    gggugaau gagcu cuuag uaugga  ccacag  cuacc ca      a
    ||||||||       ||||||||||||  |||||||  ||||    ||||    |||||||| ||||| ||||| ||||||  ||||||  ||||| ||       
    uuucuucu       cAUCUCGAGGGA  UUAGGUU  uucc    auga    uccguuua uucga ggguc auaccu  gguguu  gaugg gu      g
-ucu        cuuccca            AG       Uc    aauu    uauu        c     g     u      uc      cu     u  uuucgu 


Annotation confidence Not enough data
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Genome context
chr9: 40266722-40266935 [+]

Database links

Mature gma-miR159a-3p

Accession MIMAT0001675
Description Glycine max gma-miR159a-3p mature miRNA
Sequence 175 - UUUGGAUUGAAGGGAGCUCUA - 195
Evidence experimental
454 [1], Illumina [3]

Mature gma-miR159a-5p

Accession MIMAT0020919
Description Glycine max gma-miR159a-5p mature miRNA
Sequence 23 - GAGCUCCUUGAAGUCCAAUUG - 43
Evidence experimental
Illumina [3]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  3. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307