miRBase entry: gma-MIR166a

Stem-loop gma-MIR166a


Accession
MI0001775
Description
Glycine max gma-MIR166a precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
39 open access papers mention gma-MIR166a
(235 sentences)

Sequence

acggaagcuuugucuuuugaggGGAAUGUUGUCUGGCUCGAGGacccuucuucaucuugaucuuguguagacuacuaugcuuguggucaaggaauacauaguguugUCGGACCAGGCUUCAUUCCCCccaauuauaugcuuccaaa
..((((((..(((...(((.((((((((..((((((.((((.(((.((......((((((((..((((((....))))))....)))))))).......)).))).)))).))))))..)))))))).)))..))).))))))...

Structure
-ac      uu   cuu   a        UU      C    G   c  -ucuuca        --uu      a 
   ggaagc  ugu   uug ggGGAAUG  GUCUGG UCGA Gac cu       ucuugauc    guguag c
   ||||||  |||   ||| ||||||||  |||||| |||| ||| ||       ||||||||    ||||||  
   ccuucg  aua   aac CCCCUUAC  CGGACC GGCU uug ga       ggaacugg    cguauc u
aaa      -u   -uu   c        UU      A    g   u  uacauaa        uguu      a 


Annotation confidence Not enough data
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Genome context
chr16: 1934911-1935056 [-]

Database links

Mature gma-miR166a-3p

Accession MIMAT0001677
Description Glycine max gma-miR166a-3p mature miRNA
Sequence 107 - UCGGACCAGGCUUCAUUCCCC - 127
Evidence experimental
454 [1], Illumina [3]

Mature gma-miR166a-5p

Accession MIMAT0020920
Description Glycine max gma-miR166a-5p mature miRNA
Sequence 23 - GGAAUGUUGUCUGGCUCGAGG - 43
Evidence experimental
Illumina [3]

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13

  2. PubMed ID: 18402695
    Novel and nodulation-regulated microRNAs in soybean roots
    Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O
    BMC Genomics (2008) 9:160

  3. PubMed ID: 21663675
    Identification of novel soybean microRNAs involved in abiotic and biotic stresses
    Kulcheski FR, de Oliveira LF, Molina LG, Almerão MP, Rodrigues FA, Marcolino J, Barbosa JF, Stolf-Moreira R, Nepomuceno AL, Marcelino-Guimarães FC, Abdelnoor RV, Nascimento LC, Carazzolle MF, Pereira GA, Margis R
    BMC Genomics (2011) 12:307