Stem-loop sequence gma-MIR168a

Accession

MI0001779 (change log)

Previous IDs

gma-MIR168

Description

Glycine max miR168 stem-loop

Gene family

MIPF0000081; MIR168

Literature search

23 open access papers mention gma-MIR168a
(87 sentences)

Stem-loop

   ---    gu        ua     c          u     a       uc    -  --aa  ga 
5'    cacu  gcggucuc  auucg uuggugcagg cggga ccgguuu  gcgc gg    ug  g
      ||||  ||||||||  ||||| |||||||||| ||||| |||||||  |||| ||    ||   
3'    gugg  cgccggag  uaagu aacuacguuc gcccu gguuaag  cgcg cc    gc  g
   caa    --        gc     c          c     a       -c    g  gcug  ga 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr9: 44068673-44068797 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001779

Mature sequence gma-miR168a

• Accession: MIMAT0001681
• Previous IDs: gma-miR168
• Sequence: 19 - ucgcuuggugcaggucgggaa - 39
• Evidence: experimental; 454 [2], Northern [2], Illumina [3]

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:18402695 "Novel and nodulation-regulated microRNAs in soybean roots" Subramanian S, Fu Y, Sunkar R, Barbazuk WB, Zhu JK, Yu O BMC Genomics. 9:160(2008).
3. PMID:20122185 "Prediction of novel miRNAs and associated target genes in Glycine max" Joshi T, Yan Z, Libault M, Jeong DH, Park S, Green PJ, Sherrier DJ, Farmer A, May G, Meyers BC, Xu D, Stacey G BMC Bioinformatics. 11 Suppl 1:S14(2010).