Stem-loop sequence gma-MIR398b

Accession

MI0001788 (change log)

Description

Glycine max miR398b stem-loop

Gene family

MIPF0000107; MIR398

Literature search

15 open access papers mention gma-MIR398b
(74 sentences)

Stem-loop

   -a   caaau    uau        a   g                cu    ug a  gc       uga 
5'   guc     gguu   cucagagg gug aucugagaacacaagg  gguu  c cu  uauauua   u
     |||     ||||   |||||||| ||| ||||||||||||||||  ||||  | ||  |||||||    
3'   cag     ccaa   gaguuucc cac uggacucuuguguuuc  uuaa  g ga  auauggu   c
   ua   -uugu    -cc        c   -                au    gu -  --       uag 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Glycine_max_v2.0; GCA_000004515.3): chr2: 11080996-11081130 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001788

Mature sequence gma-miR398b-5p

• Accession: MIMAT0037314
• Sequence: 24 - gaguggaucugagaacacaagg - 45
• Evidence: experimental; Illumina [2]

Mature sequence gma-miR398b-3p

• Accession: MIMAT0001690
• Sequence: 96 - uguguucucaggucaccccuu - 116
• Evidence: by similarity; MI0001017

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:25747880 "Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean" Zhao M, Meyers BC, Cai C, Xu W, Ma J Plant Cell. 27:546-562(2015).