Stem-loop gma-MIR398b

Accession

MI0001788

Description

Glycine max gma-MIR398b precursor miRNA

Gene family

MIPF0000107; MIR398

Literature search

15 open access papers mention gma-MIR398b
(75 sentences)

Sequence

aguccaaaugguuuaucucagagGAGUGGAUCUGAGAACACAAGGcugguuugcacugcuauauuaugaucgauugguauaaggugaauuuacuuUGUGUUCUCAGGUCACCCCUUugagccaaccuguugacau
.(((.((..((((...((((((((.(((.((((((((((((((((..(((((((.((..(((((((........))))))))))))))))..))))))))))))))))))).))))))))..))))..)))))..

Structure

-a   c  au    uau        A   G                cu       a  gc       uga 
  guc aa  gguu   cucagagG GUG AUCUGAGAACACAAGG  gguuugc cu  uauauua   u
  ||| ||  ||||   |||||||| ||| ||||||||||||||||  ||||||| ||  |||||||    
  cag uu  ccaa   gaguUUCC CAC UGGACUCUUGUGUuuc  uuaagug ga  auauggu   c
ua   -  gu    -cc        C   -                au       -  --       uag 

Annotation confidence Not enough data

Genome context

chr2: 11080996-11081130 [-]

Mature gma-miR398b-3p

• Accession: MIMAT0001690
• Description: Glycine max gma-miR398b-3p mature miRNA
• Sequence: 96 - UGUGUUCUCAGGUCACCCCUU - 116
• Evidence: not_experimental

Mature gma-miR398b-5p

• Accession: MIMAT0037314
• Description: Glycine max gma-miR398b-5p mature miRNA
• Sequence: 24 - GAGUGGAUCUGAGAACACAAGG - 45
• Evidence: experimental ; Illumina [2]

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13


2. PubMed ID: 25747880
   Evolutionary patterns and coevolutionary consequences of MIRNA genes and microRNA targets triggered by multiple mechanisms of genomic duplications in soybean
   "Zhao M, Meyers BC, Cai C, Xu W, Ma J"
   "Plant Cell (2015) 27:546-562