Stem-loop zma-MIR394a

Accession

MI0001794

Description

Zea mays zma-MIR394a precursor miRNA

Gene family

MIPF0000100; MIR394

Literature search

8 open access papers mention zma-MIR394a
(16 sentences)

Sequence

542 reads, 1948 reads per million, 5 experiments

ggcgcuuacugaagaguuccUUGGCAUUCUGUCCACCUCCucucgccgaucuugcagaaaguuuaccaguucuguugcauuuuuuuuggAGGUGGGCAUACUGCCAAUGgagcuguguaggccucc
((.((((((...(.((((((((((((...(((((((((((.............((((((..........))))))............)))))))))))...)))))).)))))).)))))))))..

Structure

--  c      uga g      -      UUC           ucucgccgaucuu      aguu 
  gg gcuuac   a aguucc UUGGCA   UGUCCACCUCC             gcagaa    u
  || ||||||   | |||||| ||||||   |||||||||||             ||||||     
  uc cggaug   u ucgagG AACCGU   ACGGGUGGAgg             ugucuu    a
cc  -      --- g      U      CAU           -uuuuuuuuacgu      gacc 

Annotation confidence Not enough data

Genome context

chr5: 199240964-199241089 [+]

Mature zma-miR394a-5p

• Accession: MIMAT0001696
• Description: Zea mays zma-miR394a-5p mature miRNA
• Sequence: 21 - UUGGCAUUCUGUCCACCUCC - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR394a-3p

• Accession: MIMAT0015162
• Description: Zea mays zma-miR394a-3p mature miRNA
• Sequence: 90 - AGGUGGGCAUACUGCCAAUG - 109
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13