Stem-loop zma-MIR394b

Accession

MI0001795

Description

Zea mays zma-MIR394b precursor miRNA

Literature search

8 open access papers mention zma-MIR394b
(16 sentences)

Sequence

547 reads, 955 reads per million, 7 experiments

uggcgcuuacugagaguuccUUGGCAUUCUGUCCACCUCCcuucuugacgaucuugcagaaaguuugcuuuuuuuguuuguuuggAGGUGGGCAUACUGCCAAUGgagcugcguaggccucc
.((.((((((....((((((((((((...(((((((((((......(((((....(((((...))))).....))))).....)))))))))))...)))))).))))))..))))))))..

Structure

-u  c      ugag      -      UUC           cuucuu     -ucuu     a 
  gg gcuuac    aguucc UUGGCA   UGUCCACCUCC      gacga     gcaga  
  || ||||||    |||||| ||||||   |||||||||||      |||||     ||||| a
  uc cggaug    ucgagG AACCGU   ACGGGUGGAgg      uuguu     cguuu  
cc  -      --cg      U      CAU           -uuugu     uuuuu     g 

Annotation confidence Not enough data

Genome context

chr4: 157728375-157728496 [+]

Mature zma-miR394b-5p

• Accession: MIMAT0001697
• Description: Zea mays zma-miR394b-5p mature miRNA
• Sequence: 21 - UUGGCAUUCUGUCCACCUCC - 40
• Evidence: experimental ; Illumina [2]

Mature zma-miR394b-3p

• Accession: MIMAT0015163
• Description: Zea mays zma-miR394b-3p mature miRNA
• Sequence: 86 - AGGUGGGCAUACUGCCAAUG - 105
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13