Stem-loop zma-MIR395c

Accession

MI0001798

Description

Zea mays zma-MIR395c precursor miRNA

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395c
(86 sentences)

Sequence

ucuugguugguucucccuuggaGUUCCCUGCAAACACUUCACCAgcuaggccauagugccggcccuugcacaauguuguaucugaucaccuagcuaguGUGAAGUGUUUGGAGGAACUCuagguguuauccagcaaug
.....(((((....(.(((((((((((.(.((((((((((((((((((((.(((.((((........)))).))).............))))))).).)))))))))))).)))))))))))).)....)))))....

Structure

ucuug     uucu c           C G            - -       ------------c   a    cgg 
     guugg    c cuuggaGUUCC U CAAACACUUCAC C Agcuagg             cau gugc   c
     |||||    | ||||||||||| | |||||||||||| | |||||||             ||| ||||    
     cgacc    g ggauCUCAAGG A GUUUGUGAAGUG g ucgaucc             gua cacg   c
-guaa     uauu u           - G            u a       acuagucuauguu   a    uuc 

Annotation confidence Not enough data

Genome context

chr10: 78600687-78600824 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from zma-MIR395c

Mature zma-miR395c-5p

• Accession: MIMAT0015165
• Description: Zea mays zma-miR395c-5p mature miRNA
• Sequence: 23 - GUUCCCUGCAAACACUUCACCA - 44
• Evidence: not_experimental

Mature zma-miR395c-3p

• Accession: MIMAT0001700
• Description: Zea mays zma-miR395c-3p mature miRNA
• Sequence: 99 - GUGAAGUGUUUGGAGGAACUC - 119
• Evidence: not_experimental

References

1. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


2. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13