Stem-loop sequence zma-MIR395c

Accession

MI0001798 (change log)

Previous IDs

zma-MIR395d

Description

Zea mays miR395c stem-loop

Gene family

MIPF0000016; MIR395

Literature search

18 open access papers mention zma-MIR395c
(85 sentences)

Stem-loop

   ucuug     uucu c           c g            - -       ------------c   a    cgg 
5'      guugg    c cuuggaguucc u caaacacuucac c agcuagg             cau gugc   c
        |||||    | ||||||||||| | |||||||||||| | |||||||             ||| ||||    
3'      cgacc    g ggaucucaagg a guuugugaagug g ucgaucc             gua cacg   c
   -guaa     uauu u           - g            u a       acuagucuauguu   a    uuc 

Deep sequencing

11845 reads, 8.71e+03 reads per million, 205 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr10: 78600687-78600824 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from zma-MIR395c

• zma-MIR395c: chr10: 78600687-78600824 [-]
• zma-MIR395m: chr10: 78600541-78600622 [-]
• zma-MIR395l: chr10: 78600412-78600492 [-]
• zma-MIR395k: chr10: 78600241-78600324 [-]

Database links

• miRBase Tracker:MI0001798

Mature sequence zma-miR395c-5p

• Accession: MIMAT0015165
• Previous IDs: zma-miR395c*
• Sequence: 23 - guucccugcaaacacuucacca - 44
• Deep sequencing: 1 reads, 1 experiments
• Evidence: by similarity; MI0001035

Mature sequence zma-miR395c-3p

• Accession: MIMAT0001700
• Previous IDs: zma-miR395d;zma-miR395c
• Sequence: 99 - gugaaguguuuggaggaacuc - 119
• Deep sequencing: 363 reads, 120 experiments
• Evidence: by similarity; MI0001035

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).